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引用次数: 1

摘要

随着计算基础设施的可用性不断增加,对利用这些资源的可访问方法的需求也在增加。一种有效的方法是使面向桌面的科学软件工具和框架能够以对用户透明的方式支持高性能网络基础设施的执行。我们在正在进行的环境建模研究中发现了这种情况,我们正在应用多学科综合模型来研究枯竭的含水层。我们的模型使用开放建模接口(OpenMI)链接在一起,该接口为模型组件的顺序执行提供了一个组合框架。在这项工作中,我们研究了将并行性作为一流公民纳入OpenMI的可能性。我们提出了一个通用的解决方案,其中模型组件可以并行执行,而不需要更改它们的源代码。另一种解决方案通过同时调用各个组件来实现更高的并行性,但在某些情况下需要对它们进行修改。这可以显著减少多核桌面机器和高性能计算环境中的模拟运行时间。我们在性能研究中展示了这种潜在的加速,其中通用解决方案的应用程序在具有80核的高性能机器上执行时实现了86%的线性加速。
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Accessible Parallelization for the Open Modeling Interface
As the availability of computing infrastructure continues to increase, so too does the need for accessible means for utilizing those resources. An effective approach is to enable desktop-oriented scientific software tools and frameworks to support execution on high performance cyberinfrastructure in a way that is transparent to the user. We have found this to be the case in our ongoing environmental modeling study in which we are applying multidisciplinary, integrated models to the study of a depleting aquifer. Our models are linked together using the Open Modeling Interface (OpenMI) which provides a composition framework for the sequential execution of model components. In this work we investigate the potential for incorporating parallelism into the OpenMI as a first-class citizen. We present a general solution in which model components may be executed in parallel without requiring changes to their source code. An alternate solution achieves greater parallelism through simultaneous invocations of individual components, but requires them to be modified in some cases. These can result in significant reductions in simulation runtimes on both multi-core desktop machines as well as in high performance computing environments. We demonstrate this potential speedup in a performance study in which the application of the general solution achieved 86% of linear speedup when executed on a high performance machine with 80 cores.
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