利用线粒体标记分析朝鲜半岛特有属半硫螺旋体的遗传分化和种群结构

Q3 Agricultural and Biological Sciences Fisheries and Aquatic Sciences Pub Date : 2022-12-01 DOI:10.47853/fas.2022.e55
Eun-Mi Kim, Y. Park, H. Lee, E. Noh, Jung-Ha Kang, B. Nam, Young-Ok Kim, Taeyoung Choi
{"title":"利用线粒体标记分析朝鲜半岛特有属半硫螺旋体的遗传分化和种群结构","authors":"Eun-Mi Kim, Y. Park, H. Lee, E. Noh, Jung-Ha Kang, B. Nam, Young-Ok Kim, Taeyoung Choi","doi":"10.47853/fas.2022.e55","DOIUrl":null,"url":null,"abstract":"The genus Semisulcospira is an economically and ecologically valuable freshwater resource. Among the species, Semisulcospira coreana , Semisulcospira forticosta and Semisulcospira tegulata are endemic to the Korean peninsula and Semisulcospira gottschei is widespread in Asia. Therefore, maintenance and conservation of wild populations of these snails are important. We investigat-ed the genetic diversity and population structure of Semisulcospira based on the mitochondrial cytochrome c oxidase subunit I (COI), NADH dehydrogenase subunit 4 (ND4), and combined mitochondrial DNA (COI + ND4) sequences. All four species and various genetic makers showed a high level of haplotype diversity and a low level of nucleotide diversity. In addition, Fu’s F s and Tajima’s D neutrality tests were performed to assess the variation in size among populations. Neutrality tests of the four species yielded negative Fu’s F s and Tajima’s D values, except for populations with one haplotype. The minimum spanning network indicated a common haplotype for populations of S. coreana , S. tegulata and S. gottschei , whereas S. forticosta had a rare haplotype. Also, genetic differences and gene flows between populations were assessed by analysis of molecular variance and using the pairwise fixation index. Our findings provided insight into the degree of preservation of the species’ genetic diversity and could be utilized to enhance the management of endemic species.","PeriodicalId":12249,"journal":{"name":"Fisheries and Aquatic Sciences","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2022-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"Analysis of genetic differentiation and population structure of the\\n Korean-peninsula-endemic genus, Semisulcospira, using\\n mitochondrial markers\",\"authors\":\"Eun-Mi Kim, Y. Park, H. Lee, E. Noh, Jung-Ha Kang, B. Nam, Young-Ok Kim, Taeyoung Choi\",\"doi\":\"10.47853/fas.2022.e55\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The genus Semisulcospira is an economically and ecologically valuable freshwater resource. Among the species, Semisulcospira coreana , Semisulcospira forticosta and Semisulcospira tegulata are endemic to the Korean peninsula and Semisulcospira gottschei is widespread in Asia. Therefore, maintenance and conservation of wild populations of these snails are important. We investigat-ed the genetic diversity and population structure of Semisulcospira based on the mitochondrial cytochrome c oxidase subunit I (COI), NADH dehydrogenase subunit 4 (ND4), and combined mitochondrial DNA (COI + ND4) sequences. All four species and various genetic makers showed a high level of haplotype diversity and a low level of nucleotide diversity. In addition, Fu’s F s and Tajima’s D neutrality tests were performed to assess the variation in size among populations. Neutrality tests of the four species yielded negative Fu’s F s and Tajima’s D values, except for populations with one haplotype. The minimum spanning network indicated a common haplotype for populations of S. coreana , S. tegulata and S. gottschei , whereas S. forticosta had a rare haplotype. Also, genetic differences and gene flows between populations were assessed by analysis of molecular variance and using the pairwise fixation index. Our findings provided insight into the degree of preservation of the species’ genetic diversity and could be utilized to enhance the management of endemic species.\",\"PeriodicalId\":12249,\"journal\":{\"name\":\"Fisheries and Aquatic Sciences\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2022-12-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Fisheries and Aquatic Sciences\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.47853/fas.2022.e55\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"Agricultural and Biological Sciences\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Fisheries and Aquatic Sciences","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.47853/fas.2022.e55","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"Agricultural and Biological Sciences","Score":null,"Total":0}
引用次数: 1

摘要

半藻属是一种具有经济价值和生态价值的淡水资源。其中,coreana、forticosta和tegulata是朝鲜半岛特有的,gottschei是亚洲广泛分布的。因此,维护和保护这些蜗牛的野生种群是很重要的。基于线粒体细胞色素c氧化酶亚基I (COI)、NADH脱氢酶亚基4 (ND4)和线粒体DNA组合(COI + ND4)序列,研究了半硫酸螺旋藻的遗传多样性和群体结构。所有4个物种和各种遗传制造者均表现出高水平的单倍型多样性和低水平的核苷酸多样性。此外,还进行了Fu 's F和Tajima 's D中性检验,以评估人群中大小的变化。除单个单倍型种群外,4个物种的中性性试验均为Fu’s F和Tajima’s D值为负。最小跨越网络表明,美洲藜、美洲藜和gottschei具有共同的单倍型,而美洲藜具有罕见的单倍型。利用分子变异分析和两两固定指数,评价了群体间的遗传差异和基因流动。本研究结果有助于了解该物种遗传多样性的保护程度,并可用于加强特有物种的管理。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Analysis of genetic differentiation and population structure of the Korean-peninsula-endemic genus, Semisulcospira, using mitochondrial markers
The genus Semisulcospira is an economically and ecologically valuable freshwater resource. Among the species, Semisulcospira coreana , Semisulcospira forticosta and Semisulcospira tegulata are endemic to the Korean peninsula and Semisulcospira gottschei is widespread in Asia. Therefore, maintenance and conservation of wild populations of these snails are important. We investigat-ed the genetic diversity and population structure of Semisulcospira based on the mitochondrial cytochrome c oxidase subunit I (COI), NADH dehydrogenase subunit 4 (ND4), and combined mitochondrial DNA (COI + ND4) sequences. All four species and various genetic makers showed a high level of haplotype diversity and a low level of nucleotide diversity. In addition, Fu’s F s and Tajima’s D neutrality tests were performed to assess the variation in size among populations. Neutrality tests of the four species yielded negative Fu’s F s and Tajima’s D values, except for populations with one haplotype. The minimum spanning network indicated a common haplotype for populations of S. coreana , S. tegulata and S. gottschei , whereas S. forticosta had a rare haplotype. Also, genetic differences and gene flows between populations were assessed by analysis of molecular variance and using the pairwise fixation index. Our findings provided insight into the degree of preservation of the species’ genetic diversity and could be utilized to enhance the management of endemic species.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Fisheries and Aquatic Sciences
Fisheries and Aquatic Sciences Earth and Planetary Sciences-Oceanography
CiteScore
2.10
自引率
0.00%
发文量
47
审稿时长
6 weeks
期刊最新文献
DNA barcoding of fish diversity from Batanghari River, Jambi, Indonesia Impact of anthropogenic activities on the accumulation of heavy metals in water, sediments and some commercially important fish of the Padma River, Bangladesh Long arm octopus (Octopus minor) extract prevents eye injury caused by particulate matter exposure in zebrafish (Danio rerio) embryos Extracts of abalone intestine regulates fat metabolism in 3T3-L1 adipocytes and high fat diet-induced zebrafish larvae Biological aspects of Oreochromis niloticus (Linnaeus, 1758) in Geray Reservoir (Ethiopia) for effective sustainable fisheries
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1