Hypergraphx:用于高阶网络分析的库

IF 4.6 Q2 MATERIALS SCIENCE, BIOMATERIALS ACS Applied Bio Materials Pub Date : 2023-03-27 DOI:10.1093/comnet/cnad019
Q. F. Lotito, Martina Contisciani, C. D. Bacco, Leonardo Di Gaetano, L. Gallo, A. Montresor, F. Musciotto, Nicolò Ruggeri, F. Battiston
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引用次数: 8

摘要

从社会系统到生物系统,许多现实世界的系统都具有高阶、非二元相互作用的特征。这样的系统可以方便地用超图来描述,其中超边编码任意数量的单元之间的相互作用。在这里,我们提出了一个开源的python库,hypergraphx (HGX),为高阶网络的分析提供了一个全面的算法和函数集合。其中包括跨不同高阶表示转换数据的不同方法,在局部和中尺度上对高阶组织的各种度量,用于稀疏高阶数据的统计过滤器,广泛的静态和动态生成模型,以及具有高阶交互的不同动态过程的实现。我们的计算框架是通用的,并允许分析具有加权、有向、有符号、时间和多重群交互的超图。我们通过各种不同的可视化工具提供高阶数据的可视化见解。我们为代码提供了一个扩展的高阶数据存储库,并展示了HGX通过对具有高阶交互的社交网络的系统分析来分析现实世界系统的能力。图书馆被认为是一个不断发展的、以社区为基础的努力,它将在未来几年进一步扩展其功能。我们的软件可在https://github.com/HGX-Team/hypergraphx上获得。
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Hypergraphx: a library for higher-order network analysis
From social to biological systems, many real-world systems are characterized by higher-order, non-dyadic interactions. Such systems are conveniently described by hypergraphs, where hyperedges encode interactions among an arbitrary number of units. Here, we present an open-source python library, hypergraphx (HGX), providing a comprehensive collection of algorithms and functions for the analysis of higher-order networks. These include different ways to convert data across distinct higher-order representations, a large variety of measures of higher-order organization at the local and the mesoscale, statistical filters to sparsify higher-order data, a wide array of static and dynamic generative models, and an implementation of different dynamical processes with higher-order interactions. Our computational framework is general, and allows to analyse hypergraphs with weighted, directed, signed, temporal and multiplex group interactions. We provide visual insights on higher-order data through a variety of different visualization tools. We accompany our code with an extended higher-order data repository and demonstrate the ability of HGX to analyse real-world systems through a systematic analysis of a social network with higher-order interactions. The library is conceived as an evolving, community-based effort, which will further extend its functionalities over the years. Our software is available at https://github.com/HGX-Team/hypergraphx.
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来源期刊
ACS Applied Bio Materials
ACS Applied Bio Materials Chemistry-Chemistry (all)
CiteScore
9.40
自引率
2.10%
发文量
464
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