一些非甾体抗炎药(醋氯芬酸、水杨酸和吡罗昔康)作为1PGE抑制剂的量子化学计算和分子对接研究

S. Suresh, Sethu Gunasekaran, Shanmugam Srinivasan
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引用次数: 4

摘要

采用高斯03W程序和B3LYP方法,采用6-311++G (d,p)基集计算,确定了Aceclofenac (I)、水杨酸(II)和吡罗昔康(III)三种化合物的分子结构。采用原子序数方案对分子结构进行了充分优化。为了了解它们的结合模式和分子相互作用,我们以前列腺素H2合成酶-1 (1PGE)为靶点,采用诱导配合对接的方法对化合物Aceclofenac (I)、水杨酸(II)和吡罗昔康(III)进行对接研究。分子对接结果表明,当与前列腺素H2合成酶-1 (prostaglandin H2 synthase-1, 1PGE)对接时,乙酰氯芬酸、水杨酸和吡罗昔康的相互作用和能量表现最佳。化合物I(乙酰氯芬酸)与精氨酸部分的氢键相互作用突出,化合物II(水杨酸)与酪氨酸和丝氨酸部分的氢键相互作用突出,化合物III(吡罗昔康)与酪氨酸和精氨酸部分的氢键相互作用突出。前列腺素H2合成酶-1 (1PGE)与底物的这些相互作用负责控制COX-1抑制剂的效力,这反过来又是药物效力的直接测量。
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Quantum Chemical Calculations and Molecular Docking Studies of Some NSAID Drugs (Aceclofenac, Salicylic Acid, and Piroxicam) as 1PGE Inhibitors
The molecular structure of the three compounds Aceclofenac (I), Salicylic Acid (II), and Piroxicam (III) has been determined using Gaussian 03W program with B3LYP method using 6-311++G (d,p) basis set calculations. The molecular structures were fully optimized with atomic numbering scheme adopted in the study. To understand the mode of binding and molecular interaction, the docking studies of compounds Aceclofenac (I), Salicylic Acid (II), and Piroxicam (III) have been carried out with prostaglandin H2 synthase-1 (1PGE) as target using induced fit docking. The molecular docking results show that the interactions and energy for Aceclofenac, Salicylic Acid, and Piroxicam show the best results when docked with prostaglandin H2 synthase-1 (1PGE). The hydrogen bonding interactions of compound I (Aceclofenac) are prominent with Arginine moiety, those of compound II (Salicylic Acid) are prominent with Tyrosine and Serine moieties, and compound III (Piroxicam) shows such interaction with Tyrosine and Arginine moieties. These interactions of prostaglandin H2 synthase-1 (1PGE) with substrates are responsible for governing COX-1 inhibitor potency which in turn is a direct measure of the potency of the drug.
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