去除QM/MM方法中额外边界参数:局部自洽场方法的尝试

Pierre‐François Loos, A. Fornili, M. Sironi, X. Assfeld
{"title":"去除QM/MM方法中额外边界参数:局部自洽场方法的尝试","authors":"Pierre‐François Loos, A. Fornili, M. Sironi, X. Assfeld","doi":"10.1163/157404007782913309","DOIUrl":null,"url":null,"abstract":"We present a new quantum mechanics/molecular mechanics (QM/MM) scheme based on the Local-SCF method that avoids the extra-parametrization of the QM/MM frontier by taking into account the core electrons of the hybrid frontier atoms by means of self-consistent core orbitals (SCCO). This study follows and extends our previous investigation based on frozen core orbitals (FCO) [Chem. Phys. Lett. 427 236-240(2006)]. Test calculations on small organic compounds show that the most common atoms found in biochemical systems can be used as frontier atoms without adding any parameters, and that only relatively small geometric and energetic deviations compared to full-QM calculations are generated.","PeriodicalId":101169,"journal":{"name":"Soft Computing Letters","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2007-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"7","resultStr":"{\"title\":\"Removing the extra frontier parameters in QM/MM methods: a tentative with the Local Self-Consistent Field method\",\"authors\":\"Pierre‐François Loos, A. Fornili, M. Sironi, X. Assfeld\",\"doi\":\"10.1163/157404007782913309\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"We present a new quantum mechanics/molecular mechanics (QM/MM) scheme based on the Local-SCF method that avoids the extra-parametrization of the QM/MM frontier by taking into account the core electrons of the hybrid frontier atoms by means of self-consistent core orbitals (SCCO). This study follows and extends our previous investigation based on frozen core orbitals (FCO) [Chem. Phys. Lett. 427 236-240(2006)]. Test calculations on small organic compounds show that the most common atoms found in biochemical systems can be used as frontier atoms without adding any parameters, and that only relatively small geometric and energetic deviations compared to full-QM calculations are generated.\",\"PeriodicalId\":101169,\"journal\":{\"name\":\"Soft Computing Letters\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2007-11-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"7\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Soft Computing Letters\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1163/157404007782913309\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Soft Computing Letters","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1163/157404007782913309","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 7

摘要

本文提出了一种基于局域自洽核轨道(SCCO)的量子/分子力学(QM/MM)方案,通过考虑杂化边界原子的核心电子,避免了QM/MM边界的额外参数化。这项研究延续并扩展了我们之前基于冻结核轨道(FCO)的研究[化学]。理论物理。Lett. 427 236-240(2006)]。对小有机化合物的测试计算表明,在生化系统中发现的最常见的原子可以用作边界原子,而无需添加任何参数,并且与全qm计算相比,只产生相对较小的几何和能量偏差。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Removing the extra frontier parameters in QM/MM methods: a tentative with the Local Self-Consistent Field method
We present a new quantum mechanics/molecular mechanics (QM/MM) scheme based on the Local-SCF method that avoids the extra-parametrization of the QM/MM frontier by taking into account the core electrons of the hybrid frontier atoms by means of self-consistent core orbitals (SCCO). This study follows and extends our previous investigation based on frozen core orbitals (FCO) [Chem. Phys. Lett. 427 236-240(2006)]. Test calculations on small organic compounds show that the most common atoms found in biochemical systems can be used as frontier atoms without adding any parameters, and that only relatively small geometric and energetic deviations compared to full-QM calculations are generated.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Editorial: Socio-cultural inspired Metaheuristics A fuzzy optimization model for methane gas production from municipal solid waste A fuzzy proximity relation approach for outlier detection in the mixed dataset by using rough entropy-based weighted density method Analysis of French phonetic idiosyncrasies for accent recognition An ensemble machine learning model for the prediction of danger zones: Towards a global counter-terrorism
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1