通过UAB生物医学研究基础设施技术增强(U-BRITE),增强整个转化谱的团队科学能力

J. Cimino, Wayne H. Liang, Jelai Wang, Dongmei Sun, J. D. Osborne, Amy Y. Wang, S. L. Bridges, Matt C. Wyatt, J. Chen
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引用次数: 0

摘要

为了满足转化科学团队对多样化计算支持的需求,阿拉巴马大学伯明翰分校(UAB)信息学研究所开发了一个原型平台,称为UAB生物医学研究基础设施技术增强(U-BRITE)。该平台在符合隐私法规的环境中提供项目管理功能、大容量数据存储、临床数据访问、通过定制管道处理数据以及高性能计算。该项目是在四个生物医学科学团队的帮助下设计和开发的,每个团队都有自己的组学数据、临床数据和研究问题。本文描述了U-BRITE的体系结构(可在https://ubrite.org/访问)以及作为其初始用户的四个团队成员的经验。我们的经验为未来的数据重用和协作生物医学研究的开放科学模式提供了有用的指导。
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Empowering Team Science Across the Translational Spectrum with the UAB Biomedical Research Infrastructure Technology Enhancement (U-BRITE)
In response to a need for diverse computing support for translational science teams, the Informatics Institute at the University of Alabama at Birmingham (UAB) has developed a prototype platform called UAB Biomedical Research Infrastructure Technology Enhancement (U-BRITE). This platform provides project management functionality, high-volume data storage, access to clinical data, processing of data through custom pipelines, and high-performance computing in an environment that is compliant with privacy regulations. The project was designed and developed with the help of four biomedical sciences teams, each with their own -omics data, clinical data, and research questions. This paper describes U-BRITE’s architecture (accessible at https://ubrite.org/) and the experience of the members of four teams who were its initial users. Our experience provides useful guidance for future data reuse and an open science model of collaborative biomedical research.
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