使用遗传算法对仅在感兴趣的序列子集中表示的基序进行推理

2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) Pub Date : 2011-11-12 DOI:10.1109/BIBMW.2011.6112539

Jeffrey A. Thompson, C. Congdon

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摘要

在这项工作中，我们提出了GAMID，以及GAMI的扩展。GAMID被设计用于共表达基因或不同物种的非编码DNA的基序推断。在这些情况下，我们希望只允许推断的基序出现在输入数据的一个子集中。本文介绍了该方法并给出了初步结果。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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Using genetic algorithms for the inference of motifs that are represented in only a subset of sequences of interest

In this work, we present GAMID, and extension of GAMI. GAMID is designed to be used for motif inference in noncoding DNA for co-expressed genes or for divergent species. In these cases, we would like to allow the inferred motif to be present in only a subset of the input data. This paper describes the approach and presents preliminary results.

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2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)

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