{"title":"Mikrodizi Veri Kümesi Üzerinde Doğadan İlham Alan Optimizasyon ile Birleştirilen Uyarlanabilir Ağ Tabanlı Bulanık Çıkarım Sistemi Kullanılarak T-ALL, B-ALL ve T-LL Malignitelerinin Sınıflandırılması","authors":"Fatma Akalin, Nejat Yumuşak","doi":"10.35414/akufemubid.1259929","DOIUrl":null,"url":null,"abstract":"Leukemia is the formation of cancer with different characteristic findings. According to the progress type of disease in the body is called acute or chronic. Acute leukemias are characterized by the presence of blast cells that proliferate uncontrollably in the bone marrow and then go into the blood and tissues. Determination of T/B or non T/B cell class is important in the immunophenotypic evaluation related to subtypes of blast cells. Because the diagnosis and treatment processes of B-ALL, T-ALL and T-LL subtypes, which are composed of B and T cell lines, are different. Therefore, correct diagnosis is vital. In this study, the molecular diagnosis was provided for the accurate detection of T-ALL, B-ALL and T-LL subtypes through microarray datasets. But, microarray datasets have a multidimensional structure. Because it contains information related to the disease as well as information not related to the disease. This situation also affects the training situation and computational cost of the model. For this, the whale optimization algorithm was used in the first stage of the study. Thus, related genes were selected from the data set. Secondly, the selected potential genes were given as input to the ANFIS structure. Then, in order to improve the inference power, parameter optimization related to the membership function of the ANFIS structure was provided with ABC and PSO optimization algorithms. Finally, the predictions obtained from the ANFIS, ANFIS+ABC, and ANFIS+PSO methods for each sample were classified using the logistic regression algorithm and, an accuracy rate of 86.6% was obtained.","PeriodicalId":7433,"journal":{"name":"Afyon Kocatepe University Journal of Sciences and Engineering","volume":"112 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2023-08-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Afyon Kocatepe University Journal of Sciences and Engineering","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.35414/akufemubid.1259929","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
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摘要

白血病是一种具有不同特征性表现的癌症。根据病情的进展类型,在体内被称为急性或慢性。急性白血病的特点是骨髓中存在不受控制的增殖母细胞,然后进入血液和组织。确定T/B或非T/B细胞类别在与胚细胞亚型相关的免疫表型评估中是重要的。由于由B细胞系和T细胞系组成的B- all、T- all和T- ll亚型的诊断和治疗过程不同。因此,正确的诊断至关重要。本研究通过微阵列数据集,为T-ALL、B-ALL和T-LL亚型的准确检测提供分子诊断。但是,微阵列数据集具有多维结构。因为它既包含与疾病相关的信息,也包含与疾病无关的信息。这种情况也会影响模型的训练情况和计算成本。为此,在第一阶段的研究中使用了鲸鱼优化算法。因此,从数据集中选择相关基因。其次,将选择的潜在基因作为输入输入到ANFIS结构中。然后,为了提高推理能力,采用ABC和PSO优化算法对ANFIS结构的隶属度函数进行参数优化。最后,将ANFIS、ANFIS+ABC和ANFIS+PSO方法对每个样本的预测结果进行logistic回归算法分类,准确率为86.6%。
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Mikrodizi Veri Kümesi Üzerinde Doğadan İlham Alan Optimizasyon ile Birleştirilen Uyarlanabilir Ağ Tabanlı Bulanık Çıkarım Sistemi Kullanılarak T-ALL, B-ALL ve T-LL Malignitelerinin Sınıflandırılması
Leukemia is the formation of cancer with different characteristic findings. According to the progress type of disease in the body is called acute or chronic. Acute leukemias are characterized by the presence of blast cells that proliferate uncontrollably in the bone marrow and then go into the blood and tissues. Determination of T/B or non T/B cell class is important in the immunophenotypic evaluation related to subtypes of blast cells. Because the diagnosis and treatment processes of B-ALL, T-ALL and T-LL subtypes, which are composed of B and T cell lines, are different. Therefore, correct diagnosis is vital. In this study, the molecular diagnosis was provided for the accurate detection of T-ALL, B-ALL and T-LL subtypes through microarray datasets. But, microarray datasets have a multidimensional structure. Because it contains information related to the disease as well as information not related to the disease. This situation also affects the training situation and computational cost of the model. For this, the whale optimization algorithm was used in the first stage of the study. Thus, related genes were selected from the data set. Secondly, the selected potential genes were given as input to the ANFIS structure. Then, in order to improve the inference power, parameter optimization related to the membership function of the ANFIS structure was provided with ABC and PSO optimization algorithms. Finally, the predictions obtained from the ANFIS, ANFIS+ABC, and ANFIS+PSO methods for each sample were classified using the logistic regression algorithm and, an accuracy rate of 86.6% was obtained.
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