贝尔氏麻痹可能与IL1R1增加有关:一项新基因和lncRNA的初步研究

Zhidan Liu, Xiaoyan Li, Ying Zhao, Chuang Zhao, Chunlan Chen, Zunyuan Li, Wenge Huo
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引用次数: 0

摘要

背景:贝尔氏麻痹是一种广泛的周围神经系统疾病,不仅引起身体障碍,而且引起精神痛苦。然而,贝尔氏麻痹的病因尚不清楚。本研究旨在利用基于生物信息学工具的RNA-Seq数据,通过鉴定与贝尔麻痹患者相关的关键基因和长链非编码rna (lncRNAs),寻找潜在的影响因素。方法:检测治疗前后患者与正常对照组的差异表达基因(DEGs)和差异表达lncRNAs (DELs)。通过Cytoscape整合lncRNA-mRNA对、miRNA-mRNA调控对和miRNA-lncRNA对,构建了竞争内源rna (ceRNAs)调控网络。对DEGs和DELs的基因本体(GO)功能和京都基因与基因组百科全书(KEGG)通路分析进行评估,以探索其功能。通过ELISA和q-PCR对目标基因和病原菌进行验证。结果:在本研究中,PPI网络中的CXCR2、IL1R1等枢纽蛋白和1039对lncRNA-mRNA共表达对(如;CYYR1-AS1-MDM2)。739对miRNA-mRNA(例如;ceRNA调控网络包括255对miRNA-lncRNA和363对mRNA-lncRNA共表达对。同时,CYYR1-AS1富集到包括eb病毒(EBV)感染在内的大多数途径。随后,对神经炎症相关IL1R1和EBV的验证显示,治疗前贝尔麻痹患者血清中IL1R1表达上调,而EBV未见。结论:我们推测Bell’s麻痹的病因与复杂的miRNA-lncRNA-mRNA相互作用网络有关,il - 1可能参与了Bell’s麻痹发病过程中的炎症和免疫调节。
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Bell’s Palsy May Associate with Increased IL1R1: A Pilot Novel Gene and lncRNA Study
Background: Bell’s palsy is a widespread disease of the peripheral nervous system which causes not only physical disorders but also mental suffering as well. However, the etiological factor of Bell’s palsy is still unclear. The present study aimed to search for potential influencing factors by identifying the key genes and long non-coding RNAs (lncRNAs) involved in patients with Bell’s palsy using RNA-Seq data based on bioinformatics tools. Methods: Differentially expressed genes (DEGs) and differentially expressed lncRNAs (DELs) in patients before and after therapy, and that in normal control group were identified. The competing endogenous RNAs (ceRNAs) regulatory network was constructed by integrating lncRNA-mRNA pairs, miRNA-mRNA regulatory pairs, and miRNA-lncRNA pairs using Cytoscape. The Gene Ontology (GO) functions and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways analyses of DEGs and DELs were evaluated to explore their functions. The targeted corresponding genes and pathogens were verified by ELISA and q-PCR. Results: In the present study, hub proteins such as CXCR2 and IL1R1 in PPI network and 1039 lncRNA-mRNA co-expression pairs (eg., CYYR1-AS1-MDM2) were identified. 739 miRNA-mRNA pairs (eg., hsa-miR-147a-IL1R1), 255 miRNA-lncRNA pairs, and 363 mRNA-lncRNA co-expression pairs were included in ceRNA regulatory network. Meanwhile, CYYR1-AS1 was enriched into most pathways, including Epstein-Barr virus (EBV) infection. Subsequently, validation of neuroinflammation relevant IL1R1 and EBV showed that IL1R1 was upregulated in the serum of patients with Bell’s palsy before therapy, while EBV was not found among them. Conclusion: We hypothesized that etiological factor of Bell's palsy correlate to complex miRNA-lncRNA-mRNA interacting networks and IL1 might be involved in inflammation and immune regulation in the onset of Bell's palsy.
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