在一个经过验证的多尺度肝脏模型中伪造酶诱导机制

Glen E. P. Ropella, Tempus Dictum, R. Kennedy
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引用次数: 9

摘要

重点是一个硅肝ISL模型家族和关于大鼠肝脏药物相互作用的一套不断发展的机制假设。isl是多尺度和分层的。采用中粒酶诱导机制。复杂的、基于知识的模型的验证证伪需要整合不同的方面和方法来进行多方面的验证。对于isl来说,这种整合并不是直截了当的。证伪是至关重要的制定,测试,并迭代发展假设关于肝脏机制。在多重证伪过程中,作者可以在一个方面证伪假设的同时,在另一个方面证实它。作者展示了一个多标量验证/证伪事件,其中他们验证了针对肝脏灌注药物水平的粗粒度测量的机制,并对肝脏分区的中粒度测量进行了证伪。作者还讨论了证伪是如何指导机制假设的细化。规模验证工作的能力对于有效的科学使用模型(如isl)是必要的。
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Falsifying an Enzyme Induction Mechanism within a Validated, Multiscale Liver Model
The focus is an In Silico Liver ISL model family and an evolving suite of mechanistic hypotheses about rat liver-drug interactions. ISLs are multiscale and hierarchical. A medium grain Enzyme Induction mechanism was implemented. Validation falsification of complicated, knowledge-based models requires integrating distinct aspects and methods for multi-aspect validation. For ISLs, such integration has not been straightforward. Falsification is crucial for formulating, testing, and iteratively evolving hypotheses about liver mechanisms. During multi-aspect falsification, the authors can falsify a hypothesis in one aspect while simultaneously validating it in another aspect. The authors demonstrate a multi-scalar validation/falsification event in which they validate the mechanism against coarse grain measures of liver perfusate drug levels and falsify it against a medium grained measure of hepatic zonation. The authors also discuss how falsification is guiding mechanism hypothesis refinement. The ability to scale validation efforts is necessary for effective scientific use models such as ISLs.
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