ZEB2在泛癌组织中的预后及免疫浸润分析

Yihuang Zhan, Hui Ren, Chen Wang, Miao Yan, Zhiwei Yu, Mingzhe Li
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摘要

【目的】已知ZEB2参与多种癌症,但其在泛癌症中的功能尚未得到全面分析。本研究旨在探讨ZEB2在泛癌中的作用。[方法]从加州大学圣克鲁斯分校(UCSC) Xena和癌症基因组图谱(TCGA)下载数据。分别在TCGA_GTEx样本、TCGA样本和TCGA配对样本中研究ZEB2的mRNA表达状态,并从阿拉巴马大学伯明翰分校癌症数据分析门户网站(UALCAN)获得蛋白表达状态。对33种TCGA肿瘤进行Kaplan-Meier分析,对ZEB2可影响预后的肿瘤进行临床相关性分析及单因素和多因素Cox回归分析。此外,为了证实ZEB2在癌症中的预后价值,我们建立了肺腺癌(LUAD)和胃腺癌(STAD)的nomogram模型。采用肿瘤免疫估计资源(TIMER2.0)检测ZEB2 mRNA表达与免疫细胞浸润的关系。利用STRING构建蛋白-蛋白相互作用(PPI)网络。还使用“ClusterProfiler”包执行功能富集分析。【结果】ZEB2在大部分肿瘤中均有表达,或上调或下调,且在部分肿瘤中与临床特征相关。ZEB2的表达水平也影响肿瘤的预后。此外,ZEB2的表达与肿瘤微环境中免疫细胞的浸润水平有显著相关性。[结论]我们认为ZEB2有潜力成为一种预后生物标志物和癌症免疫治疗的有希望的靶点。
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A prognostic and immune infiltration analysis of ZEB2 in pan-cancer
[Objective] ZEB2 is known to be participated in several cancers, yet there is no comprehensive analysis about its function in pan-cancer. This study aimed to investigate the role ZEB2 plays in pan-cancer. [Methods] The data was downloaded from the University of California Santa Cruz (UCSC) Xena and the Cancer Genome Atlas (TCGA). The mRNA expression status of ZEB2 was studied in the TCGA_GTEx samples, TCGA samples and paired samples in TCGA, respectively, and protein expression status was obtained from the University of Alabama at Birmingham Cancer data analysis Portal (UALCAN). Kaplan-Meier analysis was applied to 33 kinds of tumors in TCGA, then among the cancers that ZEB2 can affect prognosis, clinical correlation analysis and univariate and multivariate Cox regression analysis were performed. Furthermore, to confirm the prognostic value of ZEB2 in cancers, nomogram models were constructed on lung adenocarcinoma (LUAD) and stomach adenocarcinoma (STAD). The relationship between ZEB2 mRNA expression and immune cell infiltrates was determined by tumor immune estimation resource (TIMER2.0). Protein-protein interaction (PPI) networks were constructed by the STRING. Functional enrichment analysis was also performed using the “ClusterProfiler” package. [Results] ZEB2 was expressed in most tumors, either upregulated or downregulated, and correlated with clinical characteristics in a part of tumors. The expression level of ZEB2 was also found to impact the prognosis of tumors. Additionally, ZEB2 expression was significantly related to immune cells infiltration level in tumor microenvironment. [Conclusion] we propose that ZEB2 has the potential to be a prognostic biomarker and a promising target for cancer immunotherapy.
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