综合生物信息学揭示乳酸脱氢酶B (LDHB)在结肠癌中的意义

F. Wulandari, Mila Hanifa
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引用次数: 0

摘要

背景:乳酸脱氢酶B (LDHB)是一种典型的氧化还原酶,在糖酵解过程中将乳酸转化为丙酮酸,在癌细胞的发展过程中起着复杂的作用。尽管如此,LDHB在结肠腺癌(COAD)中的相关性仍然不明确。因此,本研究分析了LDHB在COAD中的表达、共表达谱及其免疫相关性。材料和方法:COAD中LDHB的mRNA表达和共表达从UALCAN中检索。使用TIMER数据库评估COAD患者B细胞、CD4+ T细胞、CD8+ T细胞、巨噬细胞、中性粒细胞和树突状细胞的LDHB免疫浸润水平。对于基因本体和KEGG通路的评估,使用的是DAVID v6.8。利用STRINGDB和Cytoscape分析ldhb相关基因的蛋白-蛋白相互作用。结果:在几种样本类型中,COAD中发现了显著高表达的LDHB,并与较差的总生存率相关。此外,LDHB与CD4+、巨噬细胞和髓源性抑制细胞(MDSC)免疫浸润细胞的水平相对应。LDHB的共表达与细胞周期进程的几个必要基因有关。结论:本研究结果提示LDHB参与COAD肿瘤发生和预后。此外,本研究强调了LDHB在COAD中的免疫相关性,作为开发新的COAD免疫检查点诊断和治疗的初步数据。关键词:乳酸脱氢酶,结肠腺癌,表达,存活,免疫
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Integrative Bioinformatics Reveals the Lactate Dehydrogenase B (LDHB) Significance in Colon Adenocarcinoma
Background: Lactate dehydrogenase B (LDHB), a typical oxidoreductase for converting lactate to pyruvate in the glycolysis process, takes a complex function in the progression of cancer cells. Even so, the profile of LDHB relevance in colon adenocarcinoma (COAD) remains ambiguous. Hence this study analyzed the expression and co-expression profile of LDHB, and its immune correlation in COAD.Materials and method: The mRNA expression and co-expression of LDHB in COAD were retrieved from UALCAN. The immune infiltration levels of LDHB from B cells, CD4+ T cells, CD8+ T cells, macrophages, neutrophils, and dendritic cells in COAD were assessed using the TIMER database. For assessing gene ontology and the KEGG pathway, DAVID v6.8 was utilized. The protein-protein interaction of LDHB-correlated genes was analyzed using STRINGDB and Cytoscape.Results: Significantly high expression of LDHB in COAD was spotted in several sample types and associated with a poor overall survival rate. Further, LDHB corresponded to the level of CD4+, macrophages, and myeloid-derived suppressor cell (MDSC) immune infiltrating cells. The co-expression of LDHB was associated with several essential genes for cell cycle progression.Conclusion: The findings of this study indicate an upcoming involvement of LDHB in COAD tumorigenesis and prognosis. Additionally, this study highlights the immune correlation of LDHB in COAD as preliminary data in developing diagnosis and treatment with a novel immune checkpoint in COAD.Keywords: lactate dehydrogenase, colon adenocarcinoma, expression, survival, immune
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