在印度尼西亚的西阿拉斯海峡,Echinoporalamellosa珊瑚拥有多个共生体分支

Imam Bachtiar, M. Ghafari, I. Rahman, B. Hilda, Mahrus
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引用次数: 0

摘要

珊瑚共生多样性是影响珊瑚抗白化能力和珊瑚礁抗白化能力的重要因素之一。许多珊瑚只拥有一种共生枝,因此许多珊瑚容易受到气候变化引起的白化的影响。阿拉斯海峡的珊瑚从几次白化事件中幸存下来。目前的研究旨在研究可能影响棘孔藻存活的遗传因素。以前,据报道,在太平洋或印度洋中只有一个共生体的分支。在此,我们提供了新的证据,证明了薄叶藻寄主多个共生体分支的能力。从大肠杆菌的小片段中提取共生体rDNA,并针对ITS1-5.8S-ITS2的“非编码基因区”进行扩增。利用聚类技术,将测序样本与从GenBank NCBI下载的序列进行比对,构建系统发育树,确定共生体的枝型。构建的系统发育树基于最大似然(ML), bootstrap值为1000x,以获得最佳结果。结果表明,在E. lamellosatissue中,共生体属于B枝和c枝。这两个共生体枝的结合在以往的研究中从未被记录过,很可能对珊瑚在白化事件中存活做出了贡献。珊瑚共生多样性是影响珊瑚抗白化能力和珊瑚礁抗白化能力的重要因素之一。许多珊瑚只拥有一种共生枝,因此许多珊瑚容易受到气候变化引起的白化的影响。阿拉斯海峡的珊瑚从几次白化事件中幸存下来。目前的研究旨在研究可能影响棘孔藻存活的遗传因素。以前,据报道,在太平洋或印度洋中只有一个共生体的分支。在此,我们提供了新的证据,证明了薄叶藻寄主多个共生体分支的能力。从大肠杆菌的小片段中提取共生体rDNA,并针对ITS1-5.8S-ITS2的“非编码基因区”进行扩增。利用聚类技术,将测序样本与从GenBank NCBI下载的序列进行比对,构建系统发育树,确定共生体的枝型。构建的系统发育树基于…
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Coral Echinoporalamellosa hosts multiple clades of symbionts in Western Alas Strait, Indonesia
Coral symbiont diversity is one of the most important factors in coral resistance and coral reef resilience to bleaching. Many corals host only one symbiont clade, thus many of them vulnerable to climate change induced bleaching. Corals in Alas Strait have survived from several bleaching events. The present study aimed to look at genetic factors that potentially contributed to the survival of Echinoporalamellosa coral. Previously, E. lamellosawas reported to host only one clade of symbiont, either in Pacific or Indian Oceans. Here we provide new evidence on the ability of E. lamellosain hosting multiple clades of symbionts. The symbiont rDNA was extracted from small E. lamellosafragments and amplified by targeting ‘the non-coding gene region’ of ITS1-5.8S-ITS2. The clustering technique was used to determine the clade type of symbiont, by constructing the phylogenetic tree consist of the sequenced samples and downloaded sequences from GenBank NCBI as comparison. The constructed phylogenetic tree was based on Maximum Likelihood (ML) with bootstrap value 1000× to get the best result. The result shows the symbiont in E. lamellosatissue belonged to clades B and C. The combination of the two symbiont clades has never been recorded in previous studies, and it is very likely to have contributed to coral survival from bleaching events.Coral symbiont diversity is one of the most important factors in coral resistance and coral reef resilience to bleaching. Many corals host only one symbiont clade, thus many of them vulnerable to climate change induced bleaching. Corals in Alas Strait have survived from several bleaching events. The present study aimed to look at genetic factors that potentially contributed to the survival of Echinoporalamellosa coral. Previously, E. lamellosawas reported to host only one clade of symbiont, either in Pacific or Indian Oceans. Here we provide new evidence on the ability of E. lamellosain hosting multiple clades of symbionts. The symbiont rDNA was extracted from small E. lamellosafragments and amplified by targeting ‘the non-coding gene region’ of ITS1-5.8S-ITS2. The clustering technique was used to determine the clade type of symbiont, by constructing the phylogenetic tree consist of the sequenced samples and downloaded sequences from GenBank NCBI as comparison. The constructed phylogenetic tree was based ...
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