基于贝叶斯网络的透明细胞肾细胞癌预后放射组学模型的建立

M. Nazari, Isaac Shiri, H. Zaidi
{"title":"基于贝叶斯网络的透明细胞肾细胞癌预后放射组学模型的建立","authors":"M. Nazari, Isaac Shiri, H. Zaidi","doi":"10.1109/NSS/MIC42677.2020.9507825","DOIUrl":null,"url":null,"abstract":"Clear cell renal cell carcinoma (ccRCC) is one of the most aggressive histologic subtype of RCC. In this study, we developed and evaluated a Bayesian network as a prognostic model using computed tomography (CT) radiomic features and clinical information to predict the risk of death within 5 years for ccRCC patients. Seventy patients who had abdominal CT scans with delayed post-contrast phase and outcome data were enrolled. 3D volumes of interest (VOIs) covering the whole tumor on CT images were manually delineated. Image preprocessing techniques including, wavelet, Laplacian of Gaussian, and resampling of the intensity values to 32, 64 and 128 bin levels were applied on all VOIs. Different radiomic features, including shape, first-order, and texture features were extracted from the VOIs. For features selection, we first used the z-score method to normalize all image features, then the relevant features were selected based on mutual information (MI) criteria. The patients were divided into a low- and high-risk group based on survival or death at 5 years after surgery, respectively. Bayesian networks were used as a classifier for risk stratification. The model was evaluated using the area under the curve (AUC), sensitivity, specificity, and accuracy by 1000 bootstra resampling. The Bayesian model with Laplacian of Gaussian (LOG) filter showed the best predictive performance in this cohort with an AUC, sensitivity, specificity, and accuracy of 0.94, 85 %, 94%, and 89%, respectively. The results of the current study indicated that prognostic models based on radiomic features are very promising tools for risk stratification for ccRCC patients.","PeriodicalId":6760,"journal":{"name":"2020 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC)","volume":"7 1","pages":"1-3"},"PeriodicalIF":0.0000,"publicationDate":"2020-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Developing Bayesian Networks based Prognostic Radiomics Model for Clear Cell Renal Cell Carcinoma Patients\",\"authors\":\"M. Nazari, Isaac Shiri, H. Zaidi\",\"doi\":\"10.1109/NSS/MIC42677.2020.9507825\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Clear cell renal cell carcinoma (ccRCC) is one of the most aggressive histologic subtype of RCC. In this study, we developed and evaluated a Bayesian network as a prognostic model using computed tomography (CT) radiomic features and clinical information to predict the risk of death within 5 years for ccRCC patients. Seventy patients who had abdominal CT scans with delayed post-contrast phase and outcome data were enrolled. 3D volumes of interest (VOIs) covering the whole tumor on CT images were manually delineated. Image preprocessing techniques including, wavelet, Laplacian of Gaussian, and resampling of the intensity values to 32, 64 and 128 bin levels were applied on all VOIs. Different radiomic features, including shape, first-order, and texture features were extracted from the VOIs. For features selection, we first used the z-score method to normalize all image features, then the relevant features were selected based on mutual information (MI) criteria. The patients were divided into a low- and high-risk group based on survival or death at 5 years after surgery, respectively. Bayesian networks were used as a classifier for risk stratification. The model was evaluated using the area under the curve (AUC), sensitivity, specificity, and accuracy by 1000 bootstra resampling. The Bayesian model with Laplacian of Gaussian (LOG) filter showed the best predictive performance in this cohort with an AUC, sensitivity, specificity, and accuracy of 0.94, 85 %, 94%, and 89%, respectively. The results of the current study indicated that prognostic models based on radiomic features are very promising tools for risk stratification for ccRCC patients.\",\"PeriodicalId\":6760,\"journal\":{\"name\":\"2020 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC)\",\"volume\":\"7 1\",\"pages\":\"1-3\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2020-10-31\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2020 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/NSS/MIC42677.2020.9507825\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2020 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/NSS/MIC42677.2020.9507825","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

透明细胞肾细胞癌(ccRCC)是肾细胞癌中最具侵袭性的组织学亚型之一。在这项研究中,我们利用计算机断层扫描(CT)放射学特征和临床信息开发并评估了贝叶斯网络作为预测ccRCC患者5年内死亡风险的预后模型。70例患者进行了腹部CT扫描,对比期和结果数据延迟。CT图像上覆盖整个肿瘤的三维感兴趣体积(VOIs)被人工划定。图像预处理技术包括小波变换、拉普拉斯高斯变换以及强度值重采样到32、64和128个bin级别。提取了不同的辐射特征,包括形状特征、一阶特征和纹理特征。对于特征选择,我们首先使用z-score方法对所有图像特征进行归一化,然后基于互信息(MI)标准选择相关特征。根据术后5年生存率和死亡率将患者分为低危组和高危组。贝叶斯网络被用作风险分层的分类器。通过1000次bootstra重新采样,使用曲线下面积(AUC),灵敏度,特异性和准确性来评估模型。在该队列中,带拉普拉斯高斯滤波(LOG)的贝叶斯模型显示出最佳的预测性能,AUC、灵敏度、特异性和准确性分别为0.94、85%、94%和89%。目前的研究结果表明,基于放射学特征的预后模型是对ccRCC患者进行风险分层的非常有前途的工具。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Developing Bayesian Networks based Prognostic Radiomics Model for Clear Cell Renal Cell Carcinoma Patients
Clear cell renal cell carcinoma (ccRCC) is one of the most aggressive histologic subtype of RCC. In this study, we developed and evaluated a Bayesian network as a prognostic model using computed tomography (CT) radiomic features and clinical information to predict the risk of death within 5 years for ccRCC patients. Seventy patients who had abdominal CT scans with delayed post-contrast phase and outcome data were enrolled. 3D volumes of interest (VOIs) covering the whole tumor on CT images were manually delineated. Image preprocessing techniques including, wavelet, Laplacian of Gaussian, and resampling of the intensity values to 32, 64 and 128 bin levels were applied on all VOIs. Different radiomic features, including shape, first-order, and texture features were extracted from the VOIs. For features selection, we first used the z-score method to normalize all image features, then the relevant features were selected based on mutual information (MI) criteria. The patients were divided into a low- and high-risk group based on survival or death at 5 years after surgery, respectively. Bayesian networks were used as a classifier for risk stratification. The model was evaluated using the area under the curve (AUC), sensitivity, specificity, and accuracy by 1000 bootstra resampling. The Bayesian model with Laplacian of Gaussian (LOG) filter showed the best predictive performance in this cohort with an AUC, sensitivity, specificity, and accuracy of 0.94, 85 %, 94%, and 89%, respectively. The results of the current study indicated that prognostic models based on radiomic features are very promising tools for risk stratification for ccRCC patients.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Performance of Dual-Ended Readout PET Detectors Based on SiPMs with Different Microcell Sizes Neural Network-based Inter-crystal Scatter Event Positioning in a PET System Design Based on 3D Position Sensitive Detectors An e-LINAC driven PGNAA system for concealed drug inspection Design of a Multi-Technology Pre-Clinical SPECT System Comprehensive Simulation and Design of 3D Silicon Sensors for Enhanced Timing Performance
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1