泰米尔纳德邦地理范围内黄花属物种复合体的分子验证

Dilipsundar N, C. N, B. V, A. R, Kumaraperumal R
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摘要

本研究旨在利用dna条形码技术对泰米尔纳德邦的Aulacophora属进行鉴定。在泰米尔纳德邦的3个地区采集样本,对3种A. foveicollis、A. lewisii和A. cinta的细胞色素c氧化酶亚基I (COI)基因进行了测序。8个标本被测序并提交到Genbank。利用基于树的(系统发育树)和基于距离的(自动条形码间隙发现)方法对物种进行分子描述。数据集由35个序列组成,包括一个外组。采用邻域连接法和最大似然法构建了两个系统发育树。这两棵树都产生了六个不同的物种群,而且这两棵树的分支拓扑结构也很相似。凹尾采珠、腹腹采珠和残叶采珠分别从一个节点分支为3个不同的类群,cinta和lewisi采珠从另一个节点分支为不同的分支。ABGD法得到了与形态学资料相似的6个相同的种群。类群的p值在0.001 ~ 0.0359之间,为物种划分提供了满意的结果。基于树的方法和基于距离的方法都可以快速描绘物种并准确识别物种。
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Molecular Validation of Aulacophora Species Complex within the Geographical Limits of Tamil Nadu
The present study aimed to the delimitation of Aulacophora spp. from Tamil Nadu through DNA-barcoding. Samples were collected from three districts of Tamil Nadu and cytochrome c oxidase subunit I (COI) gene ofthree species (A. foveicollis, A. lewisii and A. cincta) was sequenced. Eight specimens were sequenced and was submitted to the Genbank. Molecular delineation of species was done using tree-based (phylogenetic tree), and distance-based (Automatic Barcode Gap Discovery) approaches. The data set consists of 35 sequences, including an out-group. Two phylogenetic trees were constructed using neighborhood joining and maximum likelihood method. Both the trees resulted in six distinct species groups, and the branching topology was also similar for both the trees. A. foveicollis, A. abdominalis and A. relicta had branched into three distinct groups from a single node, and A. cincta and A. lewisii sub-branched into different clades from another node. ABGD method gave six identical species groups similar to that of morphological data. The p-value for the grouping ranges from 0.001–0.0359, which gave satisfactory results for species delineation. Both tree-based and distance-based approachesenabled the rapid delineation of species with accurate species identification.
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