永远不会结束的故事?利用吉布斯能量监测SARS-CoV-2的生物合成和抗原受体结合的Omicron BQ.1、BQ.1.1、XBB和XBB.1变体

IF 3 4区 环境科学与生态学 Q2 ENVIRONMENTAL SCIENCES Microbial Risk Analysis Pub Date : 2023-04-01 DOI:10.1016/j.mran.2023.100250
Marko Popovic
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引用次数: 9

摘要

核糖核酸病毒有很大的变异倾向。突变发生在基因组中编码刺突糖蛋白的部分,而在基因组的其余部分则不太常见。这就是为什么结合的吉布斯能比生物合成的吉布斯能变化更大的原因。从2019年开始,在过去的3年里,被标记为Hu-1的野生型由于突变而进化产生了几十种新的变体。突变导致新病毒株的经验公式发生变化,从而导致生物合成和结合的热力学性质发生变化。这些变化导致病毒抗原与宿主细胞受体结合的反应速率和病毒在宿主细胞中增殖的速率的变化。热力学和动力学参数的变化导致传染性和致病性的生物学参数的变化。自新冠肺炎大流行开始以来,SARS-CoV-2一直在向传染性增加和保持恒定致病性的方向发展,或者对某些变体来说,致病性略有下降。在奥密克戎BQ.1、BQ.1.1、XBB和XBB.1变体的情况下,致病性与奥密克戎BA.2.75变体相同。另一方面,奥密克戎BQ.1、BQ.1.1、XBB和XBB.1变体的传染性比以前的变体更强。这很可能导致不对称共感染现象,即几种变体在人群中传播,其中一些占主导地位。
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Never ending story? Evolution of SARS-CoV-2 monitored through Gibbs energies of biosynthesis and antigen-receptor binding of Omicron BQ.1, BQ.1.1, XBB and XBB.1 variants

RNA viruses exhibit a great tendency to mutate. Mutations occur in the parts of the genome that encode the spike glycoprotein and less often in the rest of the genome. This is why Gibbs energy of binding changes more than that of biosynthesis. Starting from 2019, the wild type that was labeled Hu-1 has during the last 3 years evolved to produce several dozen new variants, as a consequence of mutations. Mutations cause changes in empirical formulas of new virus strains, which lead to change in thermodynamic properties of biosynthesis and binding. These changes cause changes in the rate of reactions of binding of virus antigen to the host cell receptor and the rate of virus multiplication in the host cell. Changes in thermodynamic and kinetic parameters lead to changes in biological parameters of infectivity and pathogenicity. Since the beginning of the COVID-19 pandemic, SARS-CoV-2 has been evolving towards increase in infectivity and maintaining constant pathogenicity, or for some variants a slight decrease in pathogenicity. In the case of Omicron BQ.1, BQ.1.1, XBB and XBB.1 variants pathogenicity is identical as in the Omicron BA.2.75 variant. On the other hand, infectivity of the Omicron BQ.1, BQ.1.1, XBB and XBB.1 variants is greater than those of previous variants. This will most likely result in the phenomenon of asymmetric coinfection, that is circulation of several variants in the population, some being dominant.

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来源期刊
Microbial Risk Analysis
Microbial Risk Analysis Medicine-Microbiology (medical)
CiteScore
5.70
自引率
7.10%
发文量
28
审稿时长
52 days
期刊介绍: The journal Microbial Risk Analysis accepts articles dealing with the study of risk analysis applied to microbial hazards. Manuscripts should at least cover any of the components of risk assessment (risk characterization, exposure assessment, etc.), risk management and/or risk communication in any microbiology field (clinical, environmental, food, veterinary, etc.). This journal also accepts article dealing with predictive microbiology, quantitative microbial ecology, mathematical modeling, risk studies applied to microbial ecology, quantitative microbiology for epidemiological studies, statistical methods applied to microbiology, and laws and regulatory policies aimed at lessening the risk of microbial hazards. Work focusing on risk studies of viruses, parasites, microbial toxins, antimicrobial resistant organisms, genetically modified organisms (GMOs), and recombinant DNA products are also acceptable.
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