Andy Yuan, Tarun Podder, Jiankui Yuan, Yiran Zheng
{"title":"使用深度学习方法对前列腺近距离放射治疗的透视图像进行植入式种子检测。","authors":"Andy Yuan, Tarun Podder, Jiankui Yuan, Yiran Zheng","doi":"10.5114/jcb.2023.125512","DOIUrl":null,"url":null,"abstract":"<p><strong>Purpose: </strong>To apply a deep learning approach to automatically detect implanted seeds on a fluoroscopy image in prostate brachytherapy.</p><p><strong>Material and methods: </strong>Forty-eight fluoroscopy images of patients, who underwent permanent seed implant (PSI) were used for this study after our Institutional Review Boards approval. Pre-processing procedures that were used to prepare for the training data, included encapsulating each seed in a bounding box, re-normalizing seed dimension, cropping to a region of prostate, and converting fluoroscopy image to PNG format. We employed a pre-trained faster region convolutional neural network (R-CNN) from PyTorch library for automatic seed detection, and leave-one-out cross-validation (LOOCV) procedure was applied to evaluate the performance of the model.</p><p><strong>Results: </strong>Almost all cases had mean average precision (mAP) greater than 0.91, with most cases (83.3%) having a mean average recall (mAR) above 0.9. All cases achieved F1-scores exceeding 0.91. The averaged results for all the cases were 0.979, 0.937, and 0.957 for mAP, mAR, and F1-score, respectively.</p><p><strong>Conclusions: </strong>Although there are limitations shown in interpreting overlapping seeds, our model is reasonably accurate and shows potential for further applications.</p>","PeriodicalId":51305,"journal":{"name":"Journal of Contemporary Brachytherapy","volume":"15 1","pages":"69-74"},"PeriodicalIF":1.1000,"publicationDate":"2023-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/d1/e9/JCB-15-50224.PMC10034725.pdf","citationCount":"0","resultStr":"{\"title\":\"Using a deep learning approach for implanted seed detection on fluoroscopy images in prostate brachytherapy.\",\"authors\":\"Andy Yuan, Tarun Podder, Jiankui Yuan, Yiran Zheng\",\"doi\":\"10.5114/jcb.2023.125512\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Purpose: </strong>To apply a deep learning approach to automatically detect implanted seeds on a fluoroscopy image in prostate brachytherapy.</p><p><strong>Material and methods: </strong>Forty-eight fluoroscopy images of patients, who underwent permanent seed implant (PSI) were used for this study after our Institutional Review Boards approval. Pre-processing procedures that were used to prepare for the training data, included encapsulating each seed in a bounding box, re-normalizing seed dimension, cropping to a region of prostate, and converting fluoroscopy image to PNG format. We employed a pre-trained faster region convolutional neural network (R-CNN) from PyTorch library for automatic seed detection, and leave-one-out cross-validation (LOOCV) procedure was applied to evaluate the performance of the model.</p><p><strong>Results: </strong>Almost all cases had mean average precision (mAP) greater than 0.91, with most cases (83.3%) having a mean average recall (mAR) above 0.9. All cases achieved F1-scores exceeding 0.91. The averaged results for all the cases were 0.979, 0.937, and 0.957 for mAP, mAR, and F1-score, respectively.</p><p><strong>Conclusions: </strong>Although there are limitations shown in interpreting overlapping seeds, our model is reasonably accurate and shows potential for further applications.</p>\",\"PeriodicalId\":51305,\"journal\":{\"name\":\"Journal of Contemporary Brachytherapy\",\"volume\":\"15 1\",\"pages\":\"69-74\"},\"PeriodicalIF\":1.1000,\"publicationDate\":\"2023-02-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/d1/e9/JCB-15-50224.PMC10034725.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Contemporary Brachytherapy\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.5114/jcb.2023.125512\",\"RegionNum\":4,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"ONCOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Contemporary Brachytherapy","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.5114/jcb.2023.125512","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"ONCOLOGY","Score":null,"Total":0}
Using a deep learning approach for implanted seed detection on fluoroscopy images in prostate brachytherapy.
Purpose: To apply a deep learning approach to automatically detect implanted seeds on a fluoroscopy image in prostate brachytherapy.
Material and methods: Forty-eight fluoroscopy images of patients, who underwent permanent seed implant (PSI) were used for this study after our Institutional Review Boards approval. Pre-processing procedures that were used to prepare for the training data, included encapsulating each seed in a bounding box, re-normalizing seed dimension, cropping to a region of prostate, and converting fluoroscopy image to PNG format. We employed a pre-trained faster region convolutional neural network (R-CNN) from PyTorch library for automatic seed detection, and leave-one-out cross-validation (LOOCV) procedure was applied to evaluate the performance of the model.
Results: Almost all cases had mean average precision (mAP) greater than 0.91, with most cases (83.3%) having a mean average recall (mAR) above 0.9. All cases achieved F1-scores exceeding 0.91. The averaged results for all the cases were 0.979, 0.937, and 0.957 for mAP, mAR, and F1-score, respectively.
Conclusions: Although there are limitations shown in interpreting overlapping seeds, our model is reasonably accurate and shows potential for further applications.
期刊介绍:
The “Journal of Contemporary Brachytherapy” is an international and multidisciplinary journal that will publish papers of original research as well as reviews of articles. Main subjects of the journal include: clinical brachytherapy, combined modality treatment, advances in radiobiology, hyperthermia and tumour biology, as well as physical aspects relevant to brachytherapy, particularly in the field of imaging, dosimetry and radiation therapy planning. Original contributions will include experimental studies of combined modality treatment, tumor sensitization and normal tissue protection, molecular radiation biology, and clinical investigations of cancer treatment in brachytherapy. Another field of interest will be the educational part of the journal.