利用Julia的自动微分和符号计算来提高频谱DCM的灵活性和速度。

David Hofmann, Anthony G Chesebro, Chris Rackauckas, Lilianne R Mujica-Parodi, Karl J Friston, Alan Edelman, Helmut H Strey
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引用次数: 0

摘要

利用神经成像和电生理数据从理论电路中推断神经参数估计需要解决反问题。在这里,我们提供了一个新的Julia语言包,旨在i)使用ModelingToolkit以简单和模块化的方式组合复杂的动态模型。j1, ii)使用拉普拉斯近似实现基于谱动态因果建模(sDCM)的参数拟合,类似于SPM12中的MATLAB实现,以及iii)利用Julia的独特优势,通过在拟合过程中使用自动微分来提高准确性和速度。为了说明我们灵活的模块化方法的实用性,我们提供了一种方法来提高校正fMRI扫描仪场强(1.5T, 3T, 7T)时拟合模型到实际数据。
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Increasing spectral DCM flexibility and speed by leveraging Julia's ModelingToolkit and automated differentiation.

Using neuroimaging and electrophysiological data to infer neural parameter estimations from theoretical circuits requires solving the inverse problem. Here, we provide a new Julia language package designed to i) compose complex dynamical models in a simple and modular way with ModelingToolkit.jl, ii) implement parameter fitting based on spectral dynamic causal modeling (sDCM) using the Laplace approximation, analogous to MATLAB implementation in SPM12, and iii) leverage Julia's unique strengths to increase accuracy and speed by employing Automatic Differentiation during the fitting procedure. To illustrate the utility of our flexible modular approach, we provide a method to improve correction for fMRI scanner field strengths (1.5T, 3T, 7T) when fitting models to real data.

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