细菌复制螺旋酶的 LH-DH 模块是 DciA 和其他螺旋酶加载器的共同结合位点。

IF 2.6 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Acta Crystallographica. Section D, Structural Biology Pub Date : 2023-02-01 Epub Date: 2023-02-06 DOI:10.1107/S2059798323000281
Claire Cargemel, Stéphanie Marsin, Magali Noiray, Pierre Legrand, Halil Bounoua, Inès Li de la Sierra-Gallay, Hélène Walbott, Sophie Quevillon-Cheruel
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引用次数: 0

摘要

在细菌基因组复制的起始步骤中,复制螺旋酶依赖专门的蛋白质将其装载到 oriC 上。DnaC 和 DnaI 是最早被鉴定的装载器。然而,大多数细菌都不含这两个基因,它们是驯化的噬菌体元件,在进化过程中多次取代了祖先无关的装载基因 dciA。为了了解 DciA 是如何协助 DnaB 加载的,我们测定了霍乱弧菌的复合物晶体结构,其中两个 VcDciA 分子与 VcDnaB 的二聚体相互作用,而不改变其典型结构。数据显示,VcDciA 在 VcDnaB 上的结合位点是由一个单体的连接螺旋 LH 和第二个单体的决定螺旋 DH 形成的保守模块。有趣的是,大肠杆菌的 DnaC 也将这一模块锁定在 EcDnaB 上。由于它们有共同的靶位点,研究表明,尽管 VcDciA 和 EcDnaC 在结构上没有相似之处,但它们可以在体外进行功能互换。这是了解噬菌体螺旋酶加载器在进化过程中劫持细菌复制螺旋酶的机制的一个里程碑。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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The LH-DH module of bacterial replicative helicases is the common binding site for DciA and other helicase loaders.

During the initiation step of bacterial genome replication, replicative helicases depend on specialized proteins for their loading onto oriC. DnaC and DnaI were the first loaders to be characterized. However, most bacteria do not contain any of these genes, which are domesticated phage elements that have replaced the ancestral and unrelated loader gene dciA several times during evolution. To understand how DciA assists the loading of DnaB, the crystal structure of the complex from Vibrio cholerae was determined, in which two VcDciA molecules interact with a dimer of VcDnaB without changing its canonical structure. The data showed that the VcDciA binding site on VcDnaB is the conserved module formed by the linker helix LH of one monomer and the determinant helix DH of the second monomer. Interestingly, DnaC from Escherichia coli also targets this module onto EcDnaB. Thanks to their common target site, it was shown that VcDciA and EcDnaC could be functionally interchanged in vitro despite sharing no structural similarity. This represents a milestone in understanding the mechanism employed by phage helicase loaders to hijack bacterial replicative helicases during evolution.

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来源期刊
Acta Crystallographica. Section D, Structural Biology
Acta Crystallographica. Section D, Structural Biology BIOCHEMICAL RESEARCH METHODSBIOCHEMISTRY &-BIOCHEMISTRY & MOLECULAR BIOLOGY
CiteScore
4.50
自引率
13.60%
发文量
216
期刊介绍: Acta Crystallographica Section D welcomes the submission of articles covering any aspect of structural biology, with a particular emphasis on the structures of biological macromolecules or the methods used to determine them. Reports on new structures of biological importance may address the smallest macromolecules to the largest complex molecular machines. These structures may have been determined using any structural biology technique including crystallography, NMR, cryoEM and/or other techniques. The key criterion is that such articles must present significant new insights into biological, chemical or medical sciences. The inclusion of complementary data that support the conclusions drawn from the structural studies (such as binding studies, mass spectrometry, enzyme assays, or analysis of mutants or other modified forms of biological macromolecule) is encouraged. Methods articles may include new approaches to any aspect of biological structure determination or structure analysis but will only be accepted where they focus on new methods that are demonstrated to be of general applicability and importance to structural biology. Articles describing particularly difficult problems in structural biology are also welcomed, if the analysis would provide useful insights to others facing similar problems.
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