新生物种基因组大小进化模式与重复元件的比例:以果蝇的willistoni亚群为例(双翅目,果蝇科)。

IF 2.3 3区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Genome Pub Date : 2023-07-01 DOI:10.1139/gen-2022-0073
Henrique R M Antoniolli, Maríndia Deprá, Vera L S Valente
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引用次数: 1

摘要

众所周知,基因组大小的进化与转座因子有关,但这种关系在早期物种中仍然知之甚少。几十年来,果蝇的willistoni亚群一直是进化研究的一个模型,因为它的物种存在不同的进化阶段和生殖隔离程度。我们这里的主要问题是物种形成如何影响基因组大小、进化和重复元件的比例,重点是转座元件。我们定量比较了属于该亚群的4个种和2个亚种的活动组及其基因组大小,并进行了比较系统发育分析。结果表明,不同物种的基因组大小和重复元件的比例随进化历史的变化而变化,但转座元件的含量存在一定差异。在不同的超家族中检测到最近转位事件的信号。它们的低基因组GC含量表明,在这些物种中,转座因子的动员可能是由宽松的自然选择促进的。此外,还检测到超家族DNA/TcMar-Tigger在这些基因组扩增中的可能作用。我们假设,正在进行的物种形成过程可能会促进观察到的重复元素比例的增加,从而增加基因组大小。
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Patterns of genome size evolution versus fraction of repetitive elements in statu nascendi species: the case of the willistoni subgroup of Drosophila (Diptera, Drosophilidae).

Genome size evolution is known to be related with transposable elements, yet such relation in incipient species remains poorly understood. For decades, the willistoni subgroup of Drosophila has been a model for evolutionary studies because of the different evolutionary stages and degrees of reproductive isolation its species present. Our main question here was how speciation influences genome size evolution and the fraction of repetitive elements, with a focus on transposable elements. We quantitatively compared the mobilome of four species and two subspecies belonging to this subgroup with their genome size, and performed comparative phylogenetic analyses. Our results showed that genome size and the fraction of repetitive elements evolved according to the evolutionary history of these species, but the content of transposable elements showed some discrepancies. Signals of recent transposition events were detected for different superfamilies. Their low genomic GC content suggests that in these species transposable element mobilization might be facilitated by relaxed natural selection. Additionally, a possible role of the superfamily DNA/TcMar-Tigger in the expansion of these genomes was also detected. We hypothesize that the undergoing process of speciation could be promoting the observed increase in the fraction of repetitive elements and, consequently, genome size.

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来源期刊
Genome
Genome 生物-生物工程与应用微生物
CiteScore
5.30
自引率
3.20%
发文量
42
审稿时长
6-12 weeks
期刊介绍: Genome is a monthly journal, established in 1959, that publishes original research articles, reviews, mini-reviews, current opinions, and commentaries. Areas of interest include general genetics and genomics, cytogenetics, molecular and evolutionary genetics, developmental genetics, population genetics, phylogenomics, molecular identification, as well as emerging areas such as ecological, comparative, and functional genomics.
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