概率解算器可以直接探索神经科学模型中的数值不确定性。

IF 1.5 4区 医学 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY Journal of Computational Neuroscience Pub Date : 2022-11-01 DOI:10.1007/s10827-022-00827-7
Jonathan Oesterle, Nicholas Krämer, Philipp Hennig, Philipp Berens
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引用次数: 0

摘要

在机制层面上理解神经计算需要神经元和神经网络的模型。要分析这种模型,通常必须求解耦合常微分方程(ode),它描述了底层神经系统的动力学。这些ODE是用确定性ODE求解器进行数值求解的,该求解器产生单个解,在精度上没有或只有全局标量误差指示器。因此,估计数值不确定性对感兴趣的数量(如峰值时间和峰值数量)的影响可能具有挑战性。为了克服这个问题,我们建议使用最近开发的基于抽样的概率求解器,它能够量化这种数值不确定性。它们既不需要详细了解模型的动力学,也不难以实现。我们表明数值不确定性可以影响典型神经科学模拟的结果,例如毫秒级的抖动尖峰,甚至从模拟中添加或删除单个尖峰,并证明概率解算器只需要适度的计算开销就可以揭示这些数值不确定性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Probabilistic solvers enable a straight-forward exploration of numerical uncertainty in neuroscience models.

Understanding neural computation on the mechanistic level requires models of neurons and neuronal networks. To analyze such models one typically has to solve coupled ordinary differential equations (ODEs), which describe the dynamics of the underlying neural system. These ODEs are solved numerically with deterministic ODE solvers that yield single solutions with either no, or only a global scalar error indicator on precision. It can therefore be challenging to estimate the effect of numerical uncertainty on quantities of interest, such as spike-times and the number of spikes. To overcome this problem, we propose to use recently developed sampling-based probabilistic solvers, which are able to quantify such numerical uncertainties. They neither require detailed insights into the kinetics of the models, nor are they difficult to implement. We show that numerical uncertainty can affect the outcome of typical neuroscience simulations, e.g. jittering spikes by milliseconds or even adding or removing individual spikes from simulations altogether, and demonstrate that probabilistic solvers reveal these numerical uncertainties with only moderate computational overhead.

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来源期刊
CiteScore
2.00
自引率
8.30%
发文量
32
审稿时长
3 months
期刊介绍: The Journal of Computational Neuroscience provides a forum for papers that fit the interface between computational and experimental work in the neurosciences. The Journal of Computational Neuroscience publishes full length original papers, rapid communications and review articles describing theoretical and experimental work relevant to computations in the brain and nervous system. Papers that combine theoretical and experimental work are especially encouraged. Primarily theoretical papers should deal with issues of obvious relevance to biological nervous systems. Experimental papers should have implications for the computational function of the nervous system, and may report results using any of a variety of approaches including anatomy, electrophysiology, biophysics, imaging, and molecular biology. Papers investigating the physiological mechanisms underlying pathologies of the nervous system, or papers that report novel technologies of interest to researchers in computational neuroscience, including advances in neural data analysis methods yielding insights into the function of the nervous system, are also welcomed (in this case, methodological papers should include an application of the new method, exemplifying the insights that it yields).It is anticipated that all levels of analysis from cognitive to cellular will be represented in the Journal of Computational Neuroscience.
期刊最新文献
Effect of burst spikes on linear and nonlinear signal transmission in spiking neurons. Mean-field analysis of synaptic alterations underlying deficient cortical gamma oscillations in schizophrenia. Firing rate models for gamma oscillations in I-I and E-I networks. JCNS goes multiscale. A cortical field theory - dynamics and symmetries.
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