Genomics, proteomics & bioinformatics

1988

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iMFP-LG: Identification of Novel Multi-Functional Peptides by Using Protein Language Models and Graph-Based Deep Learning.

Pub Date : 2024-11-25 DOI: 10.1093/gpbjnl/qzae084 Jiawei Luo, Kejuan Zhao, Junjie Chen, Caihua Yang, Fuchuan Qu, Yumeng Liu, Xiaopeng Jin, Ke Yan, Yang Zhang, Bin Liu

ProtPipe: A Multifunctional Data Analysis Pipeline for Proteomics and Peptidomics.

Pub Date : 2024-11-22 DOI: 10.1093/gpbjnl/qzae083 Ziyi Li, Cory A Weller, Syed Shah, Nicholas L Johnson, Ying Hao, Paige B Jarreau, Jessica Roberts, Deyaan Guha, Colleen Bereda, Sydney Klaisner, Pedro Machado, Matteo Zanovello, Mercedes Prudencio, Björn Oskarsson, Nathan P Staff, Dennis W Dickson, Pietro Fratta, Leonard Petrucelli, Priyanka Narayan, Mark R Cookson, Michael E Ward, Andrew B Singleton, Mike A Nalls, Yue A Qi

VISTA: A Tool for Fast Taxonomic Assignment of Viral Genome Sequences.

Pub Date : 2024-11-14 DOI: 10.1093/gpbjnl/qzae082 Tao Zhang, Yiyun Liu, Xutong Guo, Xinran Zhang, Xinchang Zheng, Mochen Zhang, Yiming Bao

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