Effects of D128N Mutation on OsSERK2 in Xa21-Mediated Immune Complex: An In Silico Study

IF 1.8 Q2 AGRONOMY Advances in Agriculture Pub Date : 2023-11-28 DOI:10.1155/2023/2749859
Raghib Ishraq Alvy, M. H. M. Mubassir, M. F. Abdul-Wahab, Salehhuddin Hamdan
{"title":"Effects of D128N Mutation on OsSERK2 in Xa21-Mediated Immune Complex: An In Silico Study","authors":"Raghib Ishraq Alvy, M. H. M. Mubassir, M. F. Abdul-Wahab, Salehhuddin Hamdan","doi":"10.1155/2023/2749859","DOIUrl":null,"url":null,"abstract":"Receptor-like kinases (RLKs) are plant proteins that form signaling circuits to transduce information through the plant cell membrane to the nucleus and activate processes that direct growth, development, stress response, and disease resistance. Upon sensing various environmental stress stimuli, RLKs interact with specific targets and recruit several other proteins to initiate the defense mechanism. Among many RLK subfamilies, leucine-rich repeat RLKs (LRR-RLKs) are the largest. Xa21, a member of LRR-RLK, is a vital receptor protein in rice plants that binds with bacterial RaxX21-sY, whereas OsSERK2 is a somatic embryogenic receptor kinase (SERK) that acts as a coreceptor in this process. This study focuses on the effect of a substitution mutation of aspartate128 with asparagine128 (D128N) in OsSERK2 on the interdependent binding pattern of the Xa21, RaxX21-sY, and OsSERK2 D128N proteins. The in silico results showed that the D128N mutation in OsSERK2 can significantly change the interaction pattern of the critical residues of the OsSERK2 and affects its receptor-ligand (Xa21-RaxX21-sY) interaction in the complex. These findings are expected to significantly contribute to the study of the structural basis of Xa21-mediated immunity and the first layer of plant defense mechanisms, thereby aiding further research on these structures and their phenotypic implications.","PeriodicalId":30608,"journal":{"name":"Advances in Agriculture","volume":"8 1","pages":""},"PeriodicalIF":1.8000,"publicationDate":"2023-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Advances in Agriculture","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1155/2023/2749859","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"AGRONOMY","Score":null,"Total":0}
引用次数: 0

Abstract

Receptor-like kinases (RLKs) are plant proteins that form signaling circuits to transduce information through the plant cell membrane to the nucleus and activate processes that direct growth, development, stress response, and disease resistance. Upon sensing various environmental stress stimuli, RLKs interact with specific targets and recruit several other proteins to initiate the defense mechanism. Among many RLK subfamilies, leucine-rich repeat RLKs (LRR-RLKs) are the largest. Xa21, a member of LRR-RLK, is a vital receptor protein in rice plants that binds with bacterial RaxX21-sY, whereas OsSERK2 is a somatic embryogenic receptor kinase (SERK) that acts as a coreceptor in this process. This study focuses on the effect of a substitution mutation of aspartate128 with asparagine128 (D128N) in OsSERK2 on the interdependent binding pattern of the Xa21, RaxX21-sY, and OsSERK2 D128N proteins. The in silico results showed that the D128N mutation in OsSERK2 can significantly change the interaction pattern of the critical residues of the OsSERK2 and affects its receptor-ligand (Xa21-RaxX21-sY) interaction in the complex. These findings are expected to significantly contribute to the study of the structural basis of Xa21-mediated immunity and the first layer of plant defense mechanisms, thereby aiding further research on these structures and their phenotypic implications.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
D128N 突变对 Xa21 介导的免疫复合物中 OsSERK2 的影响:硅学研究
受体样激酶(RLK)是一种植物蛋白,可形成信号回路,将信息通过植物细胞膜传递到细胞核,并激活指导生长、发育、应激反应和抗病的过程。在感知到各种环境胁迫刺激后,RLK 与特定靶标相互作用,并招募其他几种蛋白质启动防御机制。在众多 RLK 亚家族中,富亮氨酸重复 RLK(LRR-RLK)是最大的家族。Xa21 是 LRR-RLK 的成员之一,是水稻植物中与细菌 RaxX21-sY 结合的重要受体蛋白,而 OsSERK2 是体细胞胚胎受体激酶(SERK),在这一过程中充当核心受体。本研究的重点是 OsSERK2 中天冬氨酸 128 与天冬酰胺 128(D128N)的置换突变对 Xa21、RaxX21-sY 和 OsSERK2 D128N 蛋白相互依赖的结合模式的影响。硅学研究结果表明,OsSERK2的D128N突变可显著改变OsSERK2关键残基的相互作用模式,并影响其受体-配体(Xa21-RaxX21-sY)在复合物中的相互作用。这些发现有望极大地促进对 Xa21 介导的免疫和植物第一层防御机制的结构基础的研究,从而有助于对这些结构及其表型意义的进一步研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Advances in Agriculture
Advances in Agriculture Agricultural and Biological Sciences-Agricultural and Biological Sciences (miscellaneous)
CiteScore
2.60
自引率
0.00%
发文量
100
审稿时长
18 weeks
期刊最新文献
The Determinants of Beef Cattle Market Participation on Beef Cattle Producers’ Welfare: A Case Study of West Shewa Zone, Oromia Region, Ethiopia Determination of Optimum Level of Seeding Rate of Silver Leaf Desmodim Intercropping with Desho Grass for Dry Matter Yield and Yield-Related Components in Western Ethiopia Potential and Transformation of Indigenous Floral Foods in Africa: What Research Tells Over the Past Two Decades (2000–2022) Gamma Irradiation of Plukenetia volubilis L. Seeds Promotes Several Changes during Its Germination and Vegetative Growth Effects of D128N Mutation on OsSERK2 in Xa21-Mediated Immune Complex: An In Silico Study
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1