{"title":"Quantifying T cell morphodynamics and migration in 3D collagen matrices","authors":"Yeeren I. Low","doi":"arxiv-2401.03595","DOIUrl":null,"url":null,"abstract":"T cells undergo large shape changes (morphodynamics) when migrating. While\nprogress has been made elucidating the molecular basis of cell migration,\nstatistical characterization of morphodynamics and migration has been limited,\nparticularly in physiologically realistic 3D environments. A previous study (H.\nCavanagh et al., J. R. Soc. Interface 19: 20220081) found discrete states of\ndynamics as well as periodic oscillations of shape. However, we show that these\nresults are due to artifacts of the analysis methods. Here, we present a\nrevised analysis of the data, applying a method based on an underdamped\nLangevin equation. We find that different shape modes have different\ncorrelation times. We also find novel non-Gaussian effects. This study provides\na framework in which quantitative comparisons of cell morphodynamics and\nmigration can be made, e.g. between different biological conditions or\nmechanistic models.","PeriodicalId":501321,"journal":{"name":"arXiv - QuanBio - Cell Behavior","volume":"11 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-01-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Cell Behavior","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2401.03595","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
T cells undergo large shape changes (morphodynamics) when migrating. While
progress has been made elucidating the molecular basis of cell migration,
statistical characterization of morphodynamics and migration has been limited,
particularly in physiologically realistic 3D environments. A previous study (H.
Cavanagh et al., J. R. Soc. Interface 19: 20220081) found discrete states of
dynamics as well as periodic oscillations of shape. However, we show that these
results are due to artifacts of the analysis methods. Here, we present a
revised analysis of the data, applying a method based on an underdamped
Langevin equation. We find that different shape modes have different
correlation times. We also find novel non-Gaussian effects. This study provides
a framework in which quantitative comparisons of cell morphodynamics and
migration can be made, e.g. between different biological conditions or
mechanistic models.
T 细胞在迁移时会发生巨大的形状变化(形态动力学)。虽然在阐明细胞迁移的分子基础方面取得了进展,但对形态动力学和迁移的统计描述还很有限,尤其是在生理上逼真的三维环境中。之前的一项研究(H.Cavanagh 等人,J. R. Soc. Interface 19: 20220081)发现了动力学的离散状态以及形状的周期性振荡。然而,我们的研究表明,这些结果是由于分析方法的误差造成的。在此,我们采用基于欠阻尼朗温方程的方法,对数据进行了详细分析。我们发现,不同的形状模式具有不同的相关时间。我们还发现了新的非高斯效应。这项研究提供了一个可以对细胞形态动力学和迁移进行定量比较的框架,例如在不同生物条件或力学模型之间进行比较。