Identification of potential marker bacteria with metagenome data in boron mine detection

Q1 Agricultural and Biological Sciences Journal of the Saudi Society of Agricultural Sciences Pub Date : 2024-03-26 DOI:10.1016/j.jssas.2024.03.004

Ahmet Can, İlayda Nur Belen

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Abstract

Mining exploration programmes are being expensive and risky due to the limitations of conventional prospecting methods in identifying desired mineralisation. Worldwide, mining exploration programmes have a success rate of approximately 0.7%. Bio-geochemical methods, a sub-branch of geochemical prospecting, are used to identify potential mineralisation areas by studying the distribution of plants containing certain metals. Turkey's leading position in the world in terms of boron reserves increases the strategic importance of boron. On the other hand, metagenome analysis is an important tool in scientific research for detecting microorganisms. Our study aims to develop a cost-effective and efficient biological alternative method for detecting boron mines. Metagenome analysis output showed correlation with the presence of Calothrix sp. NIES-3974, Snodgrassella alvi, Xanthomonas citri, X. citri pv. Fuscans, Pseudomonas viciae, and Aphanothecaceae bacteria and detecting of the potential boron traces in soil. Modelling studies were also conducted on aquaporin z protein, related to the boron uptake, that can be used for utilising from boron detection.

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利用元基因组数据识别硼矿探测中的潜在标记菌

由于传统探矿方法在确定所需矿化物方面的局限性，矿业勘探项目成本高、风险大。在世界范围内，采矿勘探计划的成功率约为 0.7%。生物地球化学方法是地球化学勘探的一个分支，通过研究含有某些金属的植物的分布情况来确定潜在的矿化区域。土耳其的硼储量居世界前列，这增加了硼的战略重要性。另一方面，元基因组分析是科学研究中检测微生物的重要工具。我们的研究旨在开发一种检测硼矿的经济有效的生物替代方法。元基因组分析结果表明，土壤中存在的 Calothrix sp. NIES-3974、Snodgrassella alvi、Xanthomonas citri、X. citri pv. Fuscans、Pseudomonas viciae 和 Aphanothecaceae 细菌与检测潜在的硼痕迹相关。还对与硼吸收有关的水汽蛋白 z 蛋白进行了建模研究，该蛋白可用于硼检测。

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来源期刊

Journal of the Saudi Society of Agricultural Sciences Agricultural and Biological Sciences-Agricultural and Biological Sciences (all)

CiteScore

8.70

自引率

0.00%

发文量

审稿时长

17 days

期刊介绍： Journal of the Saudi Society of Agricultural Sciences is an English language, peer-review scholarly publication which publishes research articles and critical reviews from every area of Agricultural sciences and plant science. Scope of the journal includes, Agricultural Engineering, Plant production, Plant protection, Animal science, Agricultural extension, Agricultural economics, Food science and technology, Soil and water sciences, Irrigation science and technology and environmental science (soil formation, biological classification, mapping and management of soil). Journal of the Saudi Society of Agricultural Sciences publishes 4 issues per year and is the official publication of the King Saud University and Saudi Society of Agricultural Sciences and is published by King Saud University in collaboration with Elsevier and is edited by an international group of eminent researchers.