Role of autophagy-related genes in liver cancer prognosis

IF 3 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Genomics Pub Date : 2024-05-01 Epub Date: 2024-05-03 DOI:10.1016/j.ygeno.2024.110852
Yuling Zhou , Rong Shan , Wangti Xie, Qiang Zhou, Qinghua Yin, Yuqi Su, Jia Xiao, Pan Luo, Xiang Yao, Jianlong Fang, Fang Wen, Erdong Shen, Jie Weng
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Abstract

Autophagy, a highly conserved process of protein and organelle degradation, has emerged as a critical regulator in various diseases, including cancer progression. In the context of liver cancer, the predictive value of autophagy-related genes remains ambiguous. Leveraging chip datasets from the TCGA and GTEx databases, we identified 23 differentially expressed autophagy-related genes in liver cancer. Notably, five key autophagy genes, PRKAA2, BIRC5, MAPT, IGF1, and SPNS1, were highlighted as potential prognostic markers, with MAPT showing significant overexpression in clinical samples. In vitro cellular assays further demonstrated that MAPT promotes liver cancer cell proliferation, migration, and invasion by inhibiting autophagy and suppressing apoptosis. Subsequent in vivo studies further corroborated the pro-tumorigenic role of MAPT by suppressing autophagy. Collectively, our model based on the five key genes provides a promising tool for predicting liver cancer prognosis, with MAPT emerging as a pivotal factor in tumor progression through autophagy modulation.

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自噬相关基因在肝癌预后中的作用
自噬是一种高度保守的蛋白质和细胞器降解过程,已成为包括癌症进展在内的各种疾病的关键调节因子。在肝癌方面,自噬相关基因的预测价值仍不明确。利用 TCGA 和 GTEx 数据库的芯片数据集,我们发现了 23 个在肝癌中差异表达的自噬相关基因。值得注意的是,PRKAA2、BIRC5、MAPT、IGF1 和 SPNS1 这五个关键的自噬基因被强调为潜在的预后标志物,其中 MAPT 在临床样本中表现出显著的过表达。体外细胞实验进一步证明,MAPT 通过抑制自噬和抑制细胞凋亡来促进肝癌细胞的增殖、迁移和侵袭。随后的体内研究进一步证实了 MAPT 通过抑制自噬而起到促肿瘤作用。总之,我们基于五个关键基因的模型为预测肝癌预后提供了一个很有前景的工具,MAPT通过自噬调节成为肿瘤进展的关键因素。
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来源期刊
Genomics
Genomics 生物-生物工程与应用微生物
CiteScore
9.60
自引率
2.30%
发文量
260
审稿时长
60 days
期刊介绍: Genomics is a forum for describing the development of genome-scale technologies and their application to all areas of biological investigation. As a journal that has evolved with the field that carries its name, Genomics focuses on the development and application of cutting-edge methods, addressing fundamental questions with potential interest to a wide audience. Our aim is to publish the highest quality research and to provide authors with rapid, fair and accurate review and publication of manuscripts falling within our scope.
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