{"title":"Omics data classification using constitutive artificial neural network optimized with single candidate optimizer.","authors":"Subramaniam Madhan, Anbarasan Kalaiselvan","doi":"10.1080/0954898X.2024.2348726","DOIUrl":null,"url":null,"abstract":"<p><p>Recent technical advancements enable omics-based biological study of molecules with very high throughput and low cost, such as genomic, proteomic, and microbionics'. To overcome this drawback, Omics Data Classification using Constitutive Artificial Neural Network Optimized with Single Candidate Optimizer (ODC-ZOA-CANN-SCO) is proposed in this manuscript. The input data is pre-processing by using Adaptive variational Bayesian filtering (AVBF) to replace missing values. The pre-processing data is fed to Zebra Optimization Algorithm (ZOA) for dimensionality reduction. Then, the Constitutive Artificial Neural Network (CANN) is employed to classify omics data. The weight parameter is optimized by Single Candidate Optimizer (SCO). The proposed ODC-ZOA-CANN-SCO method attains 25.36%, 21.04%, 22.18%, 26.90%, and 28.12% higher accuracy when analysed to the existing methods like multi-omics data integration utilizing adaptive graph learning and attention mode for patient categorization with biomarker identification (MOD-AGL-AM-PABI), deep learning method depending upon multi-omics data integration to create risk stratification prediction mode for skin cutaneous melanoma (DL-MODI-RSP-SCM), Deep belief network-base model for identifying Alzheimer's disease utilizing multi-omics data (DDN-DAD-MOD), hybrid cancer prediction depending upon multi-omics data and reinforcement learning state action reward state action (HCP-MOD-RL-SARSA), machine learning basis method under omics data including biological knowledge database for cancer clinical endpoint prediction (ML-ODBKD-CCEP) methods, respectively.</p>","PeriodicalId":54735,"journal":{"name":"Network-Computation in Neural Systems","volume":" ","pages":"1-25"},"PeriodicalIF":1.1000,"publicationDate":"2024-05-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Network-Computation in Neural Systems","FirstCategoryId":"94","ListUrlMain":"https://doi.org/10.1080/0954898X.2024.2348726","RegionNum":3,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE","Score":null,"Total":0}
引用次数: 0
Abstract
Recent technical advancements enable omics-based biological study of molecules with very high throughput and low cost, such as genomic, proteomic, and microbionics'. To overcome this drawback, Omics Data Classification using Constitutive Artificial Neural Network Optimized with Single Candidate Optimizer (ODC-ZOA-CANN-SCO) is proposed in this manuscript. The input data is pre-processing by using Adaptive variational Bayesian filtering (AVBF) to replace missing values. The pre-processing data is fed to Zebra Optimization Algorithm (ZOA) for dimensionality reduction. Then, the Constitutive Artificial Neural Network (CANN) is employed to classify omics data. The weight parameter is optimized by Single Candidate Optimizer (SCO). The proposed ODC-ZOA-CANN-SCO method attains 25.36%, 21.04%, 22.18%, 26.90%, and 28.12% higher accuracy when analysed to the existing methods like multi-omics data integration utilizing adaptive graph learning and attention mode for patient categorization with biomarker identification (MOD-AGL-AM-PABI), deep learning method depending upon multi-omics data integration to create risk stratification prediction mode for skin cutaneous melanoma (DL-MODI-RSP-SCM), Deep belief network-base model for identifying Alzheimer's disease utilizing multi-omics data (DDN-DAD-MOD), hybrid cancer prediction depending upon multi-omics data and reinforcement learning state action reward state action (HCP-MOD-RL-SARSA), machine learning basis method under omics data including biological knowledge database for cancer clinical endpoint prediction (ML-ODBKD-CCEP) methods, respectively.
期刊介绍:
Network: Computation in Neural Systems welcomes submissions of research papers that integrate theoretical neuroscience with experimental data, emphasizing the utilization of cutting-edge technologies. We invite authors and researchers to contribute their work in the following areas:
Theoretical Neuroscience: This section encompasses neural network modeling approaches that elucidate brain function.
Neural Networks in Data Analysis and Pattern Recognition: We encourage submissions exploring the use of neural networks for data analysis and pattern recognition, including but not limited to image analysis and speech processing applications.
Neural Networks in Control Systems: This category encompasses the utilization of neural networks in control systems, including robotics, state estimation, fault detection, and diagnosis.
Analysis of Neurophysiological Data: We invite submissions focusing on the analysis of neurophysiology data obtained from experimental studies involving animals.
Analysis of Experimental Data on the Human Brain: This section includes papers analyzing experimental data from studies on the human brain, utilizing imaging techniques such as MRI, fMRI, EEG, and PET.
Neurobiological Foundations of Consciousness: We encourage submissions exploring the neural bases of consciousness in the brain and its simulation in machines.