{"title":"Gradient sensing limit of a cell when controlling the elongating direction","authors":"Kento Nakamura, Tetsuya J. Kobayashi","doi":"arxiv-2405.04810","DOIUrl":null,"url":null,"abstract":"Eukaryotic cells perform chemotaxis by determining the direction of chemical\ngradients based on stochastic sensing of concentrations at the cell surface. To\nexamine the efficiency of this process, previous studies have investigated the\nlimit of estimation accuracy for gradients. However, these studies assume that\nthe cell shape and gradient are constant, and do not consider how adaptive\nregulation of cell shape affects the estimation limit. Dynamics of cell shape\nduring gradient sensing is biologically ubiquitous and can influence the\nestimation by altering the way the concentration is measured, and cells may\nstrategically regulate their shape to improve estimation accuracy. To address\nthis gap, we investigate the estimation limits in dynamic situations where\ncells change shape adaptively depending on the sensed signal. We approach this\nproblem by analyzing the stationary solution of the Bayesian nonlinear\nfiltering equation. By applying diffusion approximation to the ligand-receptor\nbinding process and the Laplace method for the posterior expectation under a\nhigh signal-to-noise ratio regime, we obtain an analytical expression for the\nestimation limit. This expression indicates that estimation accuracy can be\nimproved by elongating perpendicular to the estimated direction, which is also\nconfirmed by numerical simulations. Our analysis provides a basis for\nclarifying the interplay between estimation and control in gradient sensing and\nsheds light on how cells optimize their shape to enhance chemotactic\nefficiency.","PeriodicalId":501321,"journal":{"name":"arXiv - QuanBio - Cell Behavior","volume":"155 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-05-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Cell Behavior","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2405.04810","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Eukaryotic cells perform chemotaxis by determining the direction of chemical
gradients based on stochastic sensing of concentrations at the cell surface. To
examine the efficiency of this process, previous studies have investigated the
limit of estimation accuracy for gradients. However, these studies assume that
the cell shape and gradient are constant, and do not consider how adaptive
regulation of cell shape affects the estimation limit. Dynamics of cell shape
during gradient sensing is biologically ubiquitous and can influence the
estimation by altering the way the concentration is measured, and cells may
strategically regulate their shape to improve estimation accuracy. To address
this gap, we investigate the estimation limits in dynamic situations where
cells change shape adaptively depending on the sensed signal. We approach this
problem by analyzing the stationary solution of the Bayesian nonlinear
filtering equation. By applying diffusion approximation to the ligand-receptor
binding process and the Laplace method for the posterior expectation under a
high signal-to-noise ratio regime, we obtain an analytical expression for the
estimation limit. This expression indicates that estimation accuracy can be
improved by elongating perpendicular to the estimated direction, which is also
confirmed by numerical simulations. Our analysis provides a basis for
clarifying the interplay between estimation and control in gradient sensing and
sheds light on how cells optimize their shape to enhance chemotactic
efficiency.