PathLDM: Text conditioned Latent Diffusion Model for Histopathology.

Srikar Yellapragada, Alexandros Graikos, Prateek Prasanna, Tahsin Kurc, Joel Saltz, Dimitris Samaras
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Abstract

To achieve high-quality results, diffusion models must be trained on large datasets. This can be notably prohibitive for models in specialized domains, such as computational pathology. Conditioning on labeled data is known to help in data-efficient model training. Therefore, histopathology reports, which are rich in valuable clinical information, are an ideal choice as guidance for a histopathology generative model. In this paper, we introduce PathLDM, the first text-conditioned Latent Diffusion Model tailored for generating high-quality histopathology images. Leveraging the rich contextual information provided by pathology text reports, our approach fuses image and textual data to enhance the generation process. By utilizing GPT's capabilities to distill and summarize complex text reports, we establish an effective conditioning mechanism. Through strategic conditioning and necessary architectural enhancements, we achieved a SoTA FID score of 7.64 for text-to-image generation on the TCGA-BRCA dataset, significantly outperforming the closest text-conditioned competitor with FID 30.1.

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PathLDM:用于组织病理学的文本条件潜在扩散模型。
为了获得高质量的结果,扩散模型必须在大型数据集上进行训练。对于计算病理学等专业领域的模型来说,这显然是难以实现的。众所周知,以标注数据为条件有助于提高模型训练的数据效率。因此,组织病理学报告富含宝贵的临床信息,是指导组织病理学生成模型的理想选择。在本文中,我们介绍了 PathLDM,它是首个为生成高质量组织病理学图像而量身定制的文本条件潜在扩散模型。利用病理文本报告提供的丰富上下文信息,我们的方法融合了图像和文本数据,以增强生成过程。通过利用 GPT 对复杂文本报告进行提炼和总结的功能,我们建立了一种有效的调节机制。通过策略性调节和必要的架构增强,我们在 TCGA-BRCA 数据集上的文本到图像生成中取得了 7.64 的 SoTA FID 分数,大大超过了最接近的文本调节竞争者 30.1 的 FID 分数。
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