Exploration of the mechanism of tetramethoxyflavone in treating osteoarthritis based on network pharmacology and molecular docking

Ping Chen, Baibai Ye, Cheng Lin, Chenning Zhang, Jia Chen, Linfu Li
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Abstract

ABSTRACT This study aimed to explore the potential mechanisms of TMF (5,7,3’,4’-tetramethoxyflavone) in treating osteoarthritis (OA) using network pharmacology and molecular docking. Databases including SwissTargetPrediction, BATMAN-TCM, PharmMapper, TargetNet, SuperPred, and SEA were utilized to screen the targets of TMF. “OA” was used as the disease keyword to predict OA-related genes through GeneCards, Therapeutic Target Database, PharmGKB, Online Mendelian Inheritance in Man, and Comparative Toxicogenomics Database. The Venn diagram was employed to identify the intersection of predicted targets between TMF and OA as potential targets for TMF in treating OA. The intersection targets were input into the STRING 12.0 online database to construct a protein–protein interaction (PPI) network and identify core targets. Subsequently, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed using the Metascape V3.5 online database platform. Finally, molecular docking between TMF and core targets was conducted using AutoDockTools 1.5.6. A total of 228 intersection targets for TMF treating OA were obtained, and PPI network analysis identified 5 core targets: STAT3, SRC, CTNNB1, EGFR, and AKT1. GO enrichment analysis yielded 2736 results, while KEGG analysis identified 203 pathways. Most elated GO and KEGG items of TMF in treating OA may include hormonal responses, antiviral and anticancer effects, anti-inflammation, phosphorus metabolism, phosphate metabolism, nitrogen compound responses, cancer-related pathways, PI3K-Akt signaling pathway, and MAPK signaling pathway. Molecular docking revealed good binding affinities between TMF and all core targets except STAT3. TMF might act on multiple targets and activate diverse pathways to intervene in OA, revealing the molecular processes involved in TMF treatment of OA.
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基于网络药理学和分子对接的四甲氧基黄酮治疗骨关节炎的机制探索
摘要 本研究旨在利用网络药理学和分子对接技术探索TMF(5,7,3',4'-四甲氧基黄酮)治疗骨关节炎(OA)的潜在机制。 研究人员利用 SwissTargetPrediction、BATMAN-TCM、PharmMapper、TargetNet、SuperPred 和 SEA 等数据库筛选 TMF 的靶点。以 "OA "作为疾病关键词,通过GeneCards、Therapeutic Target Database、PharmGKB、Online Mendelian Inheritance in Man和Comparative Toxicogenomics Database预测OA相关基因。采用维恩图确定 TMF 和 OA 预测靶点的交叉点,作为 TMF 治疗 OA 的潜在靶点。交叉靶点被输入 STRING 12.0 在线数据库,以构建蛋白质-蛋白质相互作用(PPI)网络并确定核心靶点。随后,利用 Metascape V3.5 在线数据库平台进行了基因本体(GO)和京都基因组百科全书(KEGG)通路富集分析。最后,使用 AutoDockTools 1.5.6 进行了 TMF 与核心靶标之间的分子对接。 共获得了228个TMF治疗OA的交叉靶点,并通过PPI网络分析确定了5个核心靶点:PPI网络分析确定了5个核心靶点:STAT3、SRC、CTNNB1、表皮生长因子受体和AKT1。GO富集分析得出了2736个结果,而KEGG分析则发现了203条通路。TMF在治疗OA方面最有价值的GO和KEGG项目可能包括激素反应、抗病毒和抗癌作用、抗炎、磷代谢、磷酸盐代谢、氮化合物反应、癌症相关通路、PI3K-Akt信号通路和MAPK信号通路。分子对接显示,除 STAT3 外,TMF 与所有核心靶点都有良好的结合亲和力。 TMF可能作用于多个靶点,激活多种途径,从而干预OA,揭示了TMF治疗OA的分子过程。
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