Temperature dependence of the near infrared absorption spectrum of single-wall carbon nanotubes dispersed by sodium dodecyl sulfate in aqueous solution: experiments and molecular dynamics study

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Molecular Modeling Pub Date : 2024-07-27 DOI:10.1007/s00894-024-06068-y
Corey Valleroy, Rosa d’Ambrosio, Christophe Blanc, Eric Anglaret, Lucyna Firlej, Carlos Wexler
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Abstract

Context

Single-wall carbon nanotubes (SWCNT) dispersed in water with the help of sodium dodecyl sulfate (SDS) surfactants exhibit a temperature dependent near infrared (NIR) exciton spectrum. Due to their biocompatibility and NIR spectrum falling within the transparent window for biological tissue, SWCNTs hold potential for sensing temperature inside cells. Here, we seek to elucidate the mechanism responsible for this temperature dependence, focusing on changes in the water coverage of the SWCNT as the surfactant structure changes with temperature. We compare optical absorption spectra in the UV–Vis-IR range and fully atomistic molecular dynamics (MD) simulations. The observed temperature dependence of the spectra for various SWCNTs may be attributed to changes in the dielectric environment and its impact on excitons. MD simulations reveal that the adsorbed SDS molecules effectively shield the SWCNT, with ~ 70% of water molecules removed from the first two adlayers; this coverage shows a modest temperature dependence. Although we are not able to directly demonstrate how this influences the NIR spectrum, this represents a potential pathway given the strong influence of the water environment on the excitons in SWCNTs.

Methods

Optical absorption measurements were carried out in the UV–Vis-NIR range using a Varian Cary 5000 spectrophotometer in a temperature-controlled environment. PeakFit™ v. 4.06 was used as peak-fitting program in the spectral range 900–1400 nm (890–1380 meV) as a function of the temperature. Fully atomistic molecular dynamics simulations were conducted using the NAMD2 package. The CHARMM force field comprising two-body bond stretching, three-body angle deformation, four-body dihedral angle deformation, and nonbonded interactions (electrostatic and Lennard–Jones 6–16 potentials) was employed.

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十二烷基硫酸钠分散的单壁碳纳米管在水溶液中的近红外吸收光谱的温度依赖性:实验和分子动力学研究
背景在十二烷基硫酸钠(SDS)表面活性剂的帮助下,分散在水中的单壁碳纳米管(SWCNT)显示出与温度相关的近红外(NIR)激发子光谱。由于其生物相容性和近红外光谱位于生物组织的透明窗口内,SWCNT 具有感测细胞内温度的潜力。在此,我们试图阐明这种温度依赖性的机理,重点研究表面活性剂结构随温度变化时 SWCNT 水覆盖率的变化。我们比较了紫外-可见-红外范围内的光学吸收光谱和完全原子分子动力学(MD)模拟。观察到的各种 SWCNT 光谱的温度依赖性可能归因于介电环境的变化及其对激子的影响。MD 模拟显示,吸附的 SDS 分子有效地屏蔽了 SWCNT,前两层吸附层中约 70% 的水分子被清除;这一覆盖率显示出适度的温度依赖性。虽然我们无法直接证明这如何影响近红外光谱,但鉴于水环境对 SWCNT 中激子的强烈影响,这代表了一种潜在的途径。方法在温控环境中使用 Varian Cary 5000 分光光度计在紫外-可见-近红外范围内进行光学吸收测量。使用 PeakFit™ v. 4.06 作为峰值拟合程序,在 900-1400 nm (890-1380 meV) 光谱范围内测量温度的变化。使用 NAMD2 软件包进行了全原子分子动力学模拟。采用的 CHARMM 力场包括二体键拉伸、三体角变形、四体二面角变形和非键相互作用(静电和伦纳德-琼斯 6-16 势)。
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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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