{"title":"Molecular structure of DNA via Zagreb connection descriptors","authors":"Muhammad Mudassar Hassan, Xiang-Feng Pan","doi":"10.1140/epje/s10189-024-00442-7","DOIUrl":null,"url":null,"abstract":"<p>Topological indices quantify the connectivity and structural properties of chemical compounds. We use the topological indices for predicting and evaluating the numerous properties of molecules, such as boiling temperatures, toxicity, and biological activity. Zagreb connection indices are a useful tool for studying the structural characteristics of the DNA backbone network. These indices provide important information on the arrangement and connections between nucleotide bases inside the DNA molecule. These indices show compactness, complexity, and topological properties in order to predict DNA bending propensity, DNA-protein interaction, and DNA stability. DNA folding patterns and the impact of mutations on DNA networks are areas of further research for these topological indices. In this study, we calculate Zagreb connection indices and modified Zagreb connection indices for backbone DNA network and subdivided backbone DNA network. Furthermore, we compute the hyper-Zagreb connection index, the inverse sum connection index, and the harmonic connection index.</p>","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"47 7","pages":""},"PeriodicalIF":1.8000,"publicationDate":"2024-07-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"The European Physical Journal E","FirstCategoryId":"4","ListUrlMain":"https://link.springer.com/article/10.1140/epje/s10189-024-00442-7","RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0
Abstract
Topological indices quantify the connectivity and structural properties of chemical compounds. We use the topological indices for predicting and evaluating the numerous properties of molecules, such as boiling temperatures, toxicity, and biological activity. Zagreb connection indices are a useful tool for studying the structural characteristics of the DNA backbone network. These indices provide important information on the arrangement and connections between nucleotide bases inside the DNA molecule. These indices show compactness, complexity, and topological properties in order to predict DNA bending propensity, DNA-protein interaction, and DNA stability. DNA folding patterns and the impact of mutations on DNA networks are areas of further research for these topological indices. In this study, we calculate Zagreb connection indices and modified Zagreb connection indices for backbone DNA network and subdivided backbone DNA network. Furthermore, we compute the hyper-Zagreb connection index, the inverse sum connection index, and the harmonic connection index.
摘要 拓扑指数量化了化合物的连接性和结构特性。我们利用拓扑指数来预测和评估分子的多种特性,如沸腾温度、毒性和生物活性。萨格勒布连接指数是研究 DNA 主干网结构特征的有用工具。这些指数提供了 DNA 分子内部核苷酸碱基排列和连接的重要信息。这些指数显示了紧凑性、复杂性和拓扑特性,可用于预测 DNA 弯曲倾向、DNA 蛋白相互作用和 DNA 稳定性。DNA 折叠模式和突变对 DNA 网络的影响是这些拓扑指数的进一步研究领域。在本研究中,我们计算了骨干 DNA 网络和细分骨干 DNA 网络的萨格勒布连接指数和修正萨格勒布连接指数。此外,我们还计算了超萨格勒布连接指数、逆和连接指数以及谐波连接指数。
期刊介绍:
EPJ E publishes papers describing advances in the understanding of physical aspects of Soft, Liquid and Living Systems.
Soft matter is a generic term for a large group of condensed, often heterogeneous systems -- often also called complex fluids -- that display a large response to weak external perturbations and that possess properties governed by slow internal dynamics.
Flowing matter refers to all systems that can actually flow, from simple to multiphase liquids, from foams to granular matter.
Living matter concerns the new physics that emerges from novel insights into the properties and behaviours of living systems. Furthermore, it aims at developing new concepts and quantitative approaches for the study of biological phenomena. Approaches from soft matter physics and statistical physics play a key role in this research.
The journal includes reports of experimental, computational and theoretical studies and appeals to the broad interdisciplinary communities including physics, chemistry, biology, mathematics and materials science.