{"title":"Pleiotropic effects of the rice qLTG3-1 allele: enhancing low-temperature germinability while reducing brown rice appearance quality","authors":"Emiko Miura, Hidekazu Takahashi, Akio Watanabe, Kenji Ueda, Tomohiko Kawamoto, Kenji Sakurai, Hiromori Akagi","doi":"10.1007/s10681-024-03388-1","DOIUrl":null,"url":null,"abstract":"<p>Rice quality has a major impact on its economic value, necessitating the breeding of high-quality grain varieties. In addition, varieties with superior germination and growth at low temperatures are required for direct sowing, which enables the low-cost production of rice. We developed Akikei770, a near-isogenic line from the high-quality, good-tasting cultivar Akitakomachi, carrying the <i>qLTG3-1</i> gene from the Maratelli cultivar, which enhances low-temperature germinability. Although Akikei770 exhibited improved low-temperature germinability, it was inferior to Akitakomachi in appearance quality of brown rice and in eating quality of cooked rice. In Akikei770, a short arm region of up to 222 kb on chromosome 3 from Maratelli was introgressed, and only the <i>qLTG3-1</i> gene exhibited polymorphisms within the coding region compared to Akitakomachi. The <i>qLTG3-1</i> genotype was significantly associated with brown rice quality in the F<sub>2</sub> population, which indicates that the <i>qLTG3-1</i> gene was involved in this trait with no involvement of other chromosomal regions of Akikei770. The functional <i>qLTG3-1</i> allele in Akikei770, encoding a hybrid glycine-rich protein (HyGRP) that is localized on the cell wall or membrane, enhanced the low-temperature germinability. Because a loss-of-function allele of <i>qLTG3-1</i> increased the appearance quality of brown rice in a recessive manner, it was concluded that HyGRP, which enhances low-temperature germinability, has a pleiotropic effect that reduces the appearance quality of brown rice.</p>","PeriodicalId":11803,"journal":{"name":"Euphytica","volume":null,"pages":null},"PeriodicalIF":1.6000,"publicationDate":"2024-07-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Euphytica","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.1007/s10681-024-03388-1","RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"AGRONOMY","Score":null,"Total":0}
引用次数: 0
Abstract
Rice quality has a major impact on its economic value, necessitating the breeding of high-quality grain varieties. In addition, varieties with superior germination and growth at low temperatures are required for direct sowing, which enables the low-cost production of rice. We developed Akikei770, a near-isogenic line from the high-quality, good-tasting cultivar Akitakomachi, carrying the qLTG3-1 gene from the Maratelli cultivar, which enhances low-temperature germinability. Although Akikei770 exhibited improved low-temperature germinability, it was inferior to Akitakomachi in appearance quality of brown rice and in eating quality of cooked rice. In Akikei770, a short arm region of up to 222 kb on chromosome 3 from Maratelli was introgressed, and only the qLTG3-1 gene exhibited polymorphisms within the coding region compared to Akitakomachi. The qLTG3-1 genotype was significantly associated with brown rice quality in the F2 population, which indicates that the qLTG3-1 gene was involved in this trait with no involvement of other chromosomal regions of Akikei770. The functional qLTG3-1 allele in Akikei770, encoding a hybrid glycine-rich protein (HyGRP) that is localized on the cell wall or membrane, enhanced the low-temperature germinability. Because a loss-of-function allele of qLTG3-1 increased the appearance quality of brown rice in a recessive manner, it was concluded that HyGRP, which enhances low-temperature germinability, has a pleiotropic effect that reduces the appearance quality of brown rice.
期刊介绍:
Euphytica is an international journal on theoretical and applied aspects of plant breeding. It publishes critical reviews and papers on the results of original research related to plant breeding.
The integration of modern and traditional plant breeding is a growing field of research using transgenic crop plants and/or marker assisted breeding in combination with traditional breeding tools. The content should cover the interests of researchers directly or indirectly involved in plant breeding, at universities, breeding institutes, seed industries, plant biotech companies and industries using plant raw materials, and promote stability, adaptability and sustainability in agriculture and agro-industries.