{"title":"A Guided Tour of Phylogenetic Comparative Methods for Studying Trait Evolution","authors":"Charlie K. Cornwallis, Ashleigh S. Griffin","doi":"10.1146/annurev-ecolsys-102221-050754","DOIUrl":null,"url":null,"abstract":"Phylogenetic comparative methods are important tools in biology, providing insights into the way traits evolve. There are many technical resources describing how these methods work. Our aim here is to complement these with an overview of the types of biological questions that can be addressed by different methods and to outline potential pitfalls and considerations when embarking on comparative studies. First, we introduce what comparative methods are and why they are important. Second, we outline how they can be used to understand when, where, and how frequently traits evolve. Third, we examine how the coevolution of traits within and between species can be studied, along with patterns of causality. Finally, we discuss how to approach comparative analyses and the ways in which different types of data, such as published relationships, omic, and remote sensing data, can be integrated.","PeriodicalId":7988,"journal":{"name":"Annual Review of Ecology, Evolution, and Systematics","volume":"3 1","pages":""},"PeriodicalIF":11.2000,"publicationDate":"2024-08-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Annual Review of Ecology, Evolution, and Systematics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1146/annurev-ecolsys-102221-050754","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"ECOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Phylogenetic comparative methods are important tools in biology, providing insights into the way traits evolve. There are many technical resources describing how these methods work. Our aim here is to complement these with an overview of the types of biological questions that can be addressed by different methods and to outline potential pitfalls and considerations when embarking on comparative studies. First, we introduce what comparative methods are and why they are important. Second, we outline how they can be used to understand when, where, and how frequently traits evolve. Third, we examine how the coevolution of traits within and between species can be studied, along with patterns of causality. Finally, we discuss how to approach comparative analyses and the ways in which different types of data, such as published relationships, omic, and remote sensing data, can be integrated.
期刊介绍:
The Annual Review of Ecology, Evolution, and Systematics is a scholarly publication that has been in circulation since 1970. It focuses on important advancements in the areas of ecology, evolutionary biology, and systematics, with relevance to all forms of life on Earth. The journal features essay reviews that encompass various topics such as phylogeny, speciation, molecular evolution, behavior, evolutionary physiology, population dynamics, ecosystem processes, and applications in invasion biology, conservation, and environmental management. Recently, the current volume of the journal transitioned from a subscription-based model to open access through the Annual Reviews' Subscribe to Open program. Consequently, all articles published in the current volume are now available under a CC BY license.