Probing the effects of single point mutations in the GKWWRPS motif on the PNAIG motif within Loop 2 of sclerostin (SOST) using in-silico techniques

IF 2.6 4区 生物学 Q2 BIOLOGY Computational Biology and Chemistry Pub Date : 2024-08-15 DOI:10.1016/j.compbiolchem.2024.108173
Mazumder Adhish, I. Manjubala
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Abstract

Sclerostin (SOST), a Wnt signaling pathway inhibitor, is involved in the pathogenesis of skeletal disorders. This study investigated the impact of the GKWWRPS motif on the PNAIG motif in Loop 2 of SOST, which is accountable for the interactions with the LRP6 protein that triggers the down-regulation of the Wnt signaling pathway. Single amino acid mutations on the GKWWRPS motif, hypothesized to have a probable stabilization effect towards the PNAIG motif, led to a significant reduction in the primary interactions between the SOST and LRP6 proteins. Protein-protein docking and molecular dynamic studies were conducted to investigate the role of the motif. The study found that a solitary mutation in the GKWWRPS motif significantly reduced the primary interactions between SOST and LRP6 proteins, except for probable cold-spot residues. The study's findings establish the GKWWRPS motif as a promising target for therapeutic interventions. Based on the obtained results, it can be inferred that alterations implemented within the GKWWRPS motif could lead to the destabilization of the PNAIG motif, which would directly modulate the interactions between the SOST and LRP6 proteins. The present investigation thus presents novel opportunities in the field of anti-sclerostin interventions.

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利用实验室内技术,探究 GKWWRPS 基因单点突变对硬骨蛋白(SOST)环 2 内 PNAIG 基因的影响。
硬骨蛋白(SOST)是一种Wnt信号通路抑制剂,与骨骼疾病的发病机制有关。该研究调查了 GKWWRPS 基序对 SOST 环路 2 中 PNAIG 基序的影响,PNAIG 基序负责与 LRP6 蛋白相互作用,从而引发 Wnt 信号通路的下调。据推测,GKWWRPS基序上的单个氨基酸突变可能会对PNAIG基序产生稳定作用,从而显著降低SOST和LRP6蛋白之间的主要相互作用。研究人员进行了蛋白质-蛋白质对接和分子动力学研究,以探究该基序的作用。研究发现,除了可能的冷点残基外,GKWWRPS基团的单独突变显著降低了SOST和LRP6蛋白之间的主要相互作用。研究结果表明,GKWWRPS基序是一个很有希望的治疗干预靶点。根据所获得的结果,可以推断在 GKWWRPS 基序内实施的改变可能会导致 PNAIG 基序的不稳定,从而直接调节 SOST 和 LRP6 蛋白质之间的相互作用。因此,本研究为抗硬化剂干预领域提供了新的机遇。
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来源期刊
Computational Biology and Chemistry
Computational Biology and Chemistry 生物-计算机:跨学科应用
CiteScore
6.10
自引率
3.20%
发文量
142
审稿时长
24 days
期刊介绍: Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered. Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered. Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.
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