Deep learning for symmetry classification using sparse 3D electron density data for inorganic compounds

IF 9.4 1区 材料科学 Q1 CHEMISTRY, PHYSICAL npj Computational Materials Pub Date : 2024-09-09 DOI:10.1038/s41524-024-01402-7
Seonghwan Kim, Byung Do Lee, Min Young Cho, Myoungho Pyo, Young-Kook Lee, Woon Bae Park, Kee-Sun Sohn
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Abstract

We report a novel deep learning (DL) method for classifying inorganic compounds using 3D electron density data. We transform Density Functional Theory (DFT)-derived CHGCAR files from the Materials Project (MP) and experimental data from the Inorganic Crystal Structure Database (ICSD) into point clouds and sparse tensors, optimized for use in DL models such as PointNet and Sparse 3D CNN. This approach effectively overcomes the limitations of handling the dense 3D data, a common challenge in DL. Contrasting with traditional 1D or 2D X-ray diffraction (XRD) patterns that necessitate complex reciprocal space analysis, our method utilizes 3D density data for direct interpretation in real lattice space. This shift significantly enhances classification accuracy, outperforming traditional XRD-driven DL methods. We achieve accuracies of 97.28%, 90.77%, and 90.10% for crystal system, extinction group, and space group classifications, respectively. Our 3D electron density-based DL approach not only showcases improved accuracy but also contributes a more intuitive and effective framework for materials discovery.

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利用稀疏三维电子密度数据对无机化合物进行对称性分类的深度学习
我们报告了一种利用三维电子密度数据对无机化合物进行分类的新型深度学习(DL)方法。我们将密度泛函理论(DFT)推导出的材料项目(MP)CHGCAR 文件和无机晶体结构数据库(ICSD)的实验数据转换成点云和稀疏张量,优化后用于点网和稀疏三维 CNN 等 DL 模型。这种方法有效克服了处理密集三维数据的局限性,这也是 DL 中的一个常见挑战。传统的一维或二维 X 射线衍射 (XRD) 图样需要进行复杂的倒易空间分析,而我们的方法则利用三维密度数据在真实晶格空间中进行直接解释。这种转变大大提高了分类准确性,优于传统的 XRD 驱动 DL 方法。我们的晶体系统、消光基团和空间群分类准确率分别达到 97.28%、90.77% 和 90.10%。我们基于三维电子密度的 DL 方法不仅提高了准确性,还为材料发现提供了一个更直观、更有效的框架。
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来源期刊
npj Computational Materials
npj Computational Materials Mathematics-Modeling and Simulation
CiteScore
15.30
自引率
5.20%
发文量
229
审稿时长
6 weeks
期刊介绍: npj Computational Materials is a high-quality open access journal from Nature Research that publishes research papers applying computational approaches for the design of new materials and enhancing our understanding of existing ones. The journal also welcomes papers on new computational techniques and the refinement of current approaches that support these aims, as well as experimental papers that complement computational findings. Some key features of npj Computational Materials include a 2-year impact factor of 12.241 (2021), article downloads of 1,138,590 (2021), and a fast turnaround time of 11 days from submission to the first editorial decision. The journal is indexed in various databases and services, including Chemical Abstracts Service (ACS), Astrophysics Data System (ADS), Current Contents/Physical, Chemical and Earth Sciences, Journal Citation Reports/Science Edition, SCOPUS, EI Compendex, INSPEC, Google Scholar, SCImago, DOAJ, CNKI, and Science Citation Index Expanded (SCIE), among others.
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