Light-weight neural network for intra-voxel structure analysis

IF 2.5 4区 医学 Q2 MATHEMATICAL & COMPUTATIONAL BIOLOGY Frontiers in Neuroinformatics Pub Date : 2024-09-09 DOI:10.3389/fninf.2024.1277050
Jaime F. Aguayo-González, Hanna Ehrlich-Lopez, Luis Concha, Mariano Rivera
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Abstract

We present a novel neural network-based method for analyzing intra-voxel structures, addressing critical challenges in diffusion-weighted MRI analysis for brain connectivity and development studies. The network architecture, called the Local Neighborhood Neural Network, is designed to use the spatial correlations of neighboring voxels for an enhanced inference while reducing parameter overhead. Our model exploits these relationships to improve the analysis of complex structures and noisy data environments. We adopt a self-supervised approach to address the lack of ground truth data, generating signals of voxel neighborhoods to integrate the training set. This eliminates the need for manual annotations and facilitates training under realistic conditions. Comparative analyses show that our method outperforms the constrained spherical deconvolution (CSD) method in quantitative and qualitative validations. Using phantom images that mimic in vivo data, our approach improves angular error, volume fraction estimation accuracy, and success rate. Furthermore, a qualitative comparison of the results in actual data shows a better spatial consistency of the proposed method in areas of real brain images. This approach demonstrates enhanced intra-voxel structure analysis capabilities and holds promise for broader application in various imaging scenarios.
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用于体素内结构分析的轻量级神经网络
我们提出了一种基于神经网络的新方法来分析体素内结构,以解决大脑连接和发育研究中弥散加权磁共振成像分析所面临的关键挑战。该网络架构被称为 "本地邻近神经网络",旨在利用邻近体素的空间相关性来增强推理能力,同时减少参数开销。我们的模型利用这些关系改进了对复杂结构和嘈杂数据环境的分析。我们采用自我监督的方法来解决缺乏地面实况数据的问题,生成体素邻域信号来整合训练集。这样就不需要人工标注,便于在现实条件下进行训练。对比分析表明,在定量和定性验证方面,我们的方法优于约束球面解卷积(CSD)方法。通过使用模拟体内数据的幻影图像,我们的方法改善了角度误差、体积分数估计准确性和成功率。此外,对实际数据结果的定性比较显示,所提出的方法在真实大脑图像区域内具有更好的空间一致性。这种方法展示了更强的体素内结构分析能力,有望在各种成像场景中得到更广泛的应用。
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来源期刊
Frontiers in Neuroinformatics
Frontiers in Neuroinformatics MATHEMATICAL & COMPUTATIONAL BIOLOGY-NEUROSCIENCES
CiteScore
4.80
自引率
5.70%
发文量
132
审稿时长
14 weeks
期刊介绍: Frontiers in Neuroinformatics publishes rigorously peer-reviewed research on the development and implementation of numerical/computational models and analytical tools used to share, integrate and analyze experimental data and advance theories of the nervous system functions. Specialty Chief Editors Jan G. Bjaalie at the University of Oslo and Sean L. Hill at the École Polytechnique Fédérale de Lausanne are supported by an outstanding Editorial Board of international experts. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to researchers, academics and the public worldwide. Neuroscience is being propelled into the information age as the volume of information explodes, demanding organization and synthesis. Novel synthesis approaches are opening up a new dimension for the exploration of the components of brain elements and systems and the vast number of variables that underlie their functions. Neural data is highly heterogeneous with complex inter-relations across multiple levels, driving the need for innovative organizing and synthesizing approaches from genes to cognition, and covering a range of species and disease states. Frontiers in Neuroinformatics therefore welcomes submissions on existing neuroscience databases, development of data and knowledge bases for all levels of neuroscience, applications and technologies that can facilitate data sharing (interoperability, formats, terminologies, and ontologies), and novel tools for data acquisition, analyses, visualization, and dissemination of nervous system data. Our journal welcomes submissions on new tools (software and hardware) that support brain modeling, and the merging of neuroscience databases with brain models used for simulation and visualization.
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