Effect of non-covalent interactions on the stability and structural properties of 2,4-dioxo-4-phenylbutanoic complex: a computational analysis

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Molecular Modeling Pub Date : 2024-10-15 DOI:10.1007/s00894-024-06176-9
Marziyeh Mohammadi, Fatemeh Sharifi, Azadeh Khanmohammadi
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Abstract

Context

The 2,4-dioxo-4-phenylbutanoic acid (DPBA) is a subject of interest in pharmaceutical research, particularly in developing new drugs targeting viral and bacterial infections. Complexation with metal ions can improve the stability and solubility of organic compounds. The present study uses quantum chemical calculations to explore the structural and electronic results arising from the interaction between the metal cation (Fe2+) and the π-system of DPBA in different solvents. For this purpose, the analyses of atoms in molecules (AIM) and natural bond orbital (NBO) are employed to comprehend the interaction features and the charge delocalization during the process of complexation. The results demonstrate that the strongest/weakest interactions are evident when the complex is situated in non-polar/polar solvents, respectively. In addition, the investigated complex exhibits two intramolecular hydrogen bonds (IMHBs) characterized by the O–H···O motif. The results indicate that the HBs present in the complex fall within the category of weak to medium HBs. Moreover, the O–H···O HBs are influenced by cation–π interactions, which can increase/decrease their strength in polar/non-polar solvents. To enhance understanding of the interactions above, an examination is conducted on various physical properties including the energy gap, electronic chemical potential, chemical hardness, softness, and electrophilicity power.

Method

All calculations are conducted within the density functional theory (DFT) using the ωB97XD functional and 6–311 +  + G(d,p) basis set. The computations are performed using the quantum chemistry package GAMESS, and the obtained results are visualized by employing the GaussView program.

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非共价相互作用对 2,4-二氧代-4-苯基丁酸复合物稳定性和结构特性的影响:计算分析
背景 2,4-二氧代-4-苯基丁酸(DPBA)是制药研究中的一个重要课题,尤其是在开发针对病毒和细菌感染的新药方面。与金属离子络合可以提高有机化合物的稳定性和溶解度。本研究利用量子化学计算来探讨金属阳离子(Fe2+)与 DPBA 的 π 系统在不同溶剂中相互作用所产生的结构和电子结果。为此,研究人员采用了分子中原子(AIM)和自然键轨道(NBO)分析方法来理解络合过程中的相互作用特征和电荷析出。研究结果表明,当复合物分别位于非极性和极性溶剂中时,其相互作用最强/最弱。此外,所研究的复合物还表现出两个分子内氢键(IMHBs),其特征为 O-H-O 主题。结果表明,复合物中存在的氢键属于弱到中等氢键。此外,O-H--O 氢键还受到阳离子-π相互作用的影响,在极性/非极性溶剂中会增加/减少其强度。为了加深对上述相互作用的理解,我们对各种物理性质进行了研究,包括能隙、电子化学势、化学硬度、软度和亲电力。方法所有计算都是在密度泛函理论(DFT)中使用 ωB97XD 函数和 6-311 + + G(d,p) 基集进行的。计算使用量子化学软件包 GAMESS 进行,计算结果通过 GaussView 程序可视化显示。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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