DFT-Based Permutationally Invariant Polynomial Potentials Capture the Twists and Turns of C14H30

IF 5.7 1区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Chemical Theory and Computation Pub Date : 2024-10-21 DOI:10.1021/acs.jctc.4c00932
Chen Qu, Paul L. Houston, Thomas Allison, Barry I. Schneider, Joel M. Bowman
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Abstract

Hydrocarbons are ubiquitous as fuels, solvents, lubricants, and as the principal components of plastics and fibers, yet our ability to predict their dynamical properties is limited to force-field mechanics. Here, we report two machine-learned potential energy surfaces (PESs) for the linear 44-atom hydrocarbon C14H30 using an extensive data set of roughly 250,000 density functional theory (DFT) (B3LYP) energies for a large variety of configurations, obtained using MM3 direct-dynamics calculations at 500, 1000, and 2500 K. The surfaces, based on Permutationally Invariant Polynomials (PIPs) and using both a many-body expansion approach and a fragmented-basis approach, produce precise fits for energies and forces and also produce excellent out-of-sample agreement with direct DFT calculations for torsional and dihedral angle potentials. Going beyond precision, the PESs are used in molecular dynamics calculations that demonstrate the robustness of the PESs for a large range of conformations. The many-body PIPs PES, although more compute intensive than the fragmented-basis one, is directly transferable for other linear hydrocarbons.

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基于 DFT 的排列不变多项式势能捕捉 C14H30 的曲折变化
碳氢化合物作为燃料、溶剂、润滑剂以及塑料和纤维的主要成分无处不在,但我们预测其动态特性的能力却仅限于力场力学。在这里,我们报告了线性 44 原子碳氢化合物 C14H30 的两个机器学习势能面(PES),这些势能面使用了大量数据集,其中包括在 500、1000 和 2500 K 下通过 MM3 直接动力学计算获得的大量构型的大约 25 万个密度泛函理论(DFT)(B3LYP)能量。这些表面基于排列不变多项式 (PIP),同时使用多体展开方法和片段基础方法,能精确拟合能量和力,并在扭转角和二面角势方面与直接 DFT 计算产生了极好的样本外一致性。除了精确度之外,PES 还被用于分子动力学计算,这证明了 PES 对于大量构象的稳健性。多体 PIPs PES 虽然比片段基础 PES 的计算量大,但可直接用于其他线性碳氢化合物。
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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