Parallel Spectral Tuning of a Cone Visual Pigment Provides Evidence for Ancient Deep-Sea Adaptations in Cetaceans.

IF 3.2 2区 生物学 Q2 EVOLUTIONARY BIOLOGY Genome Biology and Evolution Pub Date : 2024-10-09 DOI:10.1093/gbe/evae223
Hai Chi, Linxia Sun, Na Li, Yue Zhan, Jinqu Guo, Lei Lei, David M Irwin, Guang Yang, Shixia Xu, Yang Liu
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Abstract

Dichromatic color vision is mediated by two cone visual pigments in many eutherian mammals. After reentry into the sea, early cetaceans lost their violet-sensitive visual pigment (short wavelength-sensitive 1) independently in the baleen and toothed whale ancestors and thus obtained only monochromatic cone vision. Subsequently, losses of the middle/long wavelength-sensitive (M/LWS) pigment have also been reported in multiple whale lineages, leading to rhodopsin (RH1)-mediated rod monochromatic vision. To further elucidate the phenotypic evolution of whale visual pigments, we assessed the spectral tuning of both M/LWS and RH1 from representative cetacean taxa. Interestingly, although the coding sequences for M/LWS are intact in both the pygmy right whale and the Baird's beaked whale, no spectral sensitivity was detected in vitro. Pseudogenization of other cone vision-related genes is observed in the pygmy right whale, suggesting a loss of cone-mediated vision. After ancestral sequence reconstructions, ancient M/LWS pigments from cetacean ancestors were resurrected and functionally measured. Spectral tuning of M/LWS from the baleen whale ancestor shows that it is green sensitive, with a 40-nm shift in sensitivity to a shorter wavelength. For the ancestor of sperm whales, although no spectral sensitivity could be recorded for its M/LWS pigment, a substantial sensitivity shift (20 to 30 nm) to a shorter wavelength may have also occurred before its functional inactivation. The parallel phenotypic evolution of M/LWS to shorter wavelength sensitivity might be visual adaptations in whales allowing more frequent deep-sea activities, although additional ecological differentiations may have led to their subsequent losses.

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一种锥体视觉色素的平行光谱调谐为鲸目动物古老的深海适应性提供了证据。
在许多信风哺乳动物中,二色性色觉是由两种视锥视觉色素介导的。在重新进入海洋后,须鲸和齿鲸祖先的早期鲸类独立地失去了对紫光敏感的视觉色素(SWS1),因此只能获得单色的视锥视觉。随后,在多个鲸系中也出现了中/长波长敏感(M/LWS)色素缺失的报道,从而导致了由罗多司蛋白(RH1)介导的杆状单色视觉。为了进一步阐明鲸类视觉色素的表型进化,我们评估了具有代表性的鲸类类群的 M/LWS 和 RH1 的光谱调谐。有趣的是,尽管M/LWS的编码序列在侏儒露脊鲸和贝氏喙鲸中都是完整的,但在体外却检测不到光谱敏感性。在侏儒露脊鲸中还观察到其他锥状视觉相关基因的假基因化,这表明其丧失了锥状视觉。经过祖先序列重建,鲸目动物祖先的古老 M/LWS 色素得以复活并进行了功能测定。须鲸祖先的 M/LWS 的光谱调谐显示,它对绿色敏感,对较短波长的敏感度有 40 nm 的偏移。至于抹香鲸的祖先,虽然无法记录其 M/LWS 色素的光谱敏感性,但在其功能失活之前,也可能发生了向较短波长的大幅度敏感性转移(20-30 nm)。M/LWS向短波长敏感性的平行表型进化可能是鲸鱼的视觉适应,使其能够更频繁地进行深海活动,尽管随后的生态分化可能导致其丧失。
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来源期刊
Genome Biology and Evolution
Genome Biology and Evolution EVOLUTIONARY BIOLOGY-GENETICS & HEREDITY
CiteScore
5.80
自引率
6.10%
发文量
169
审稿时长
1 months
期刊介绍: About the journal Genome Biology and Evolution (GBE) publishes leading original research at the interface between evolutionary biology and genomics. Papers considered for publication report novel evolutionary findings that concern natural genome diversity, population genomics, the structure, function, organisation and expression of genomes, comparative genomics, proteomics, and environmental genomic interactions. Major evolutionary insights from the fields of computational biology, structural biology, developmental biology, and cell biology are also considered, as are theoretical advances in the field of genome evolution. GBE’s scope embraces genome-wide evolutionary investigations at all taxonomic levels and for all forms of life — within populations or across domains. Its aims are to further the understanding of genomes in their evolutionary context and further the understanding of evolution from a genome-wide perspective.
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