ROBERT: Bridging the Gap Between Machine Learning and Chemistry

IF 16.8 2区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Wiley Interdisciplinary Reviews: Computational Molecular Science Pub Date : 2024-10-22 DOI:10.1002/wcms.1733
David Dalmau, Juan V. Alegre-Requena
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Abstract

Beyond addressing technological demands, the integration of machine learning (ML) into human societies has also promoted sustainability through the adoption of digitalized protocols. Despite these advantages and the abundance of available toolkits, a substantial implementation gap is preventing the widespread incorporation of ML protocols into the computational and experimental chemistry communities. In this work, we introduce ROBERT, a software carefully crafted to make ML more accessible to chemists of all programming skill levels, while achieving results comparable to those of field experts. We conducted benchmarking using six recent ML studies in chemistry containing from 18 to 4149 entries. Furthermore, we demonstrated the program's ability to initiate workflows directly from SMILES strings, which simplifies the generation of ML predictors for common chemistry problems. To assess ROBERT's practicality in real-life scenarios, we employed it to discover new luminescent Pd complexes with a modest dataset of 23 points, a frequently encountered scenario in experimental studies.

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罗伯特:缩小机器学习与化学之间的差距
除了满足技术需求之外,机器学习(ML)与人类社会的融合还通过采用数字化协议促进了可持续发展。尽管有这些优势和大量可用的工具包,但实施方面的巨大差距阻碍了 ML 协议在计算和实验化学界的广泛应用。在这项工作中,我们介绍了 ROBERT,这是一款精心设计的软件,旨在让所有编程技能水平的化学家都能更方便地使用 ML,同时取得与领域专家相当的结果。我们使用最近六项化学领域的 ML 研究(包含 18 到 4149 个条目)进行了基准测试。此外,我们还展示了该程序直接从 SMILES 字符串启动工作流的能力,从而简化了常见化学问题的 ML 预测器的生成。为了评估 ROBERT 在实际应用中的实用性,我们利用它发现了新的发光钯配合物,数据集只有 23 个点,这在实验研究中是经常遇到的情况。
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来源期刊
Wiley Interdisciplinary Reviews: Computational Molecular Science
Wiley Interdisciplinary Reviews: Computational Molecular Science CHEMISTRY, MULTIDISCIPLINARY-MATHEMATICAL & COMPUTATIONAL BIOLOGY
CiteScore
28.90
自引率
1.80%
发文量
52
审稿时长
6-12 weeks
期刊介绍: Computational molecular sciences harness the power of rigorous chemical and physical theories, employing computer-based modeling, specialized hardware, software development, algorithm design, and database management to explore and illuminate every facet of molecular sciences. These interdisciplinary approaches form a bridge between chemistry, biology, and materials sciences, establishing connections with adjacent application-driven fields in both chemistry and biology. WIREs Computational Molecular Science stands as a platform to comprehensively review and spotlight research from these dynamic and interconnected fields.
期刊最新文献
Issue Information Embedded Many-Body Green's Function Methods for Electronic Excitations in Complex Molecular Systems ROBERT: Bridging the Gap Between Machine Learning and Chemistry Advanced quantum and semiclassical methods for simulating photoinduced molecular dynamics and spectroscopy Computational design of energy-related materials: From first-principles calculations to machine learning
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