Definition of reproductive structures in Eucalyptus for phenological data collection.

IF 3 3区 地球科学 Q2 BIOPHYSICS International Journal of Biometeorology Pub Date : 2024-11-14 DOI:10.1007/s00484-024-02820-4
Claudia Helena Giraldo Escobar, Marie R Keatley, Sabine Kasel, Julian Di Stefano, Craig R Nitschke
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Abstract

In an era where global climate change is shifting plant phenology, global meta-analyses of multiple species are required more than ever. Common language or references for enhanced data compatibility are key for such analyses. Although the Plant Phenology Ontology (PPO) addresses this challenge, it does not capture several relevant reproductive structures that are critical in species with long reproductive cycles, like many Eucalyptus species. We reviewed the terminology and concepts that describe reproductive structures in eucalypts and compared them with the existing classes of the PPO to explore the PPO's potential for harmonizing disparate eucalypt datasets. We identified incongruencies within and between eucalypt terminology and the PPO. We tested the sensitivity of the PPO for capturing key eucalypt phenological structures and found it sensitive to classification of certain structures. To address these limitations, we developed the Eucalyptus Phenology Ontology (EPO), a new ontology that builds on the PPO and captures key reproductive structures using a more refined classification. The EPO integrates the relationships between reproductive structures, phenological stages, and phenological traits. The vocabulary is species-neutral so it can be applied to other taxa but specifies the synonyms and descriptions required to capture the complexity of eucalypt phenology.

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为收集物候数据定义桉树的生殖结构。
在全球气候变化改变植物物候的时代,比以往任何时候都更需要对多个物种进行全球元分析。增强数据兼容性的通用语言或参考文献是此类分析的关键。尽管植物物候本体(PPO)解决了这一难题,但它并没有捕捉到一些相关的生殖结构,而这些生殖结构对于生殖周期长的物种(如许多桉树物种)至关重要。我们回顾了描述桉树生殖结构的术语和概念,并将其与 PPO 的现有类别进行了比较,以探索 PPO 协调不同桉树数据集的潜力。我们发现了桉树术语与 PPO 之间的不协调之处。我们测试了 PPO 对捕捉关键桉树物候结构的敏感性,发现它对某些结构的分类很敏感。为了解决这些局限性,我们开发了桉树物候本体(EPO),这是一个建立在 PPO 基础上的新本体,使用更精细的分类捕捉关键的生殖结构。EPO 整合了生殖结构、物候阶段和物候性状之间的关系。该词汇表是物种中性的,因此可应用于其他类群,但也规定了捕捉桉树物候复杂性所需的同义词和描述。
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来源期刊
CiteScore
6.40
自引率
9.40%
发文量
183
审稿时长
1 months
期刊介绍: The Journal publishes original research papers, review articles and short communications on studies examining the interactions between living organisms and factors of the natural and artificial atmospheric environment. Living organisms extend from single cell organisms, to plants and animals, including humans. The atmospheric environment includes climate and weather, electromagnetic radiation, and chemical and biological pollutants. The journal embraces basic and applied research and practical aspects such as living conditions, agriculture, forestry, and health. The journal is published for the International Society of Biometeorology, and most membership categories include a subscription to the Journal.
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