Dynamic evolution analysis and parameter optimization design of data-driven network infectious disease model

IF 4.9 2区 医学 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Computer methods and programs in biomedicine Pub Date : 2024-11-17 DOI:10.1016/j.cmpb.2024.108509
Linhe Zhu , Siyi Chen , Shuling Shen
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Abstract

Background and Objective:

globalization and population mobility have increased the spread of infectious diseases and challenged public health security. This paper proposes a complex network epidemic model with nonlinear incidence rate and quadratic transmission. The Turing pattern, sensitivity analysis and parameter identification of the epidemic model under different network structures are studied;

Methods:

this paper discusses the Turing pattern of the model under different network structures, and identifies the key parameters of the model through sensitivity analysis. The influence of network dimension on the spread of infectious diseases on random networks is also explored, and the problems of minimum path and minimum cover set of random networks are further discussed. We also carry out parameter identification experiments, adopt gradient descent algorithm to realize heterogeneous spatial fitting pattern of red blood cell plasma and simulate the transmission path of COVID-19 through Markov chain Monte Carlo fitting experiment, verifying the effectiveness of the model;

Results:

the necessary conditions for Turing instability on homogeneous and heterogeneous networks are found. On the heterogeneous lattice network, we observe the special patterns of equal density population. Sensitivity analysis shows that the higher the infection rate, the more infected people. On random networks, the higher the dimension, the better the effect of suppressing the spread of infectious diseases. Through comparison experiment, it is found that gradient descent algorithm has the best performance in parameter identification experiments. Red blood cell plasma fitting experiment reveals the spatial density distribution of infection rate;

Conclusions:

this study provides theoretical support for the prevention and control of infectious diseases, and the complex network model can simulate the transmission process of infectious diseases more accurately. Sensitivity analysis and parameter identification experiments reveal the key influencing factors of propagation and the role of network structure. The effectiveness of the model is supported by actual data, which is helpful for the government health departments to formulate scientific prevention and control strategies.
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数据驱动网络传染病模型的动态演化分析和参数优化设计。
背景和目的:全球化和人口流动加剧了传染病的传播,对公共卫生安全提出了挑战。本文提出了非线性发病率和二次传播的复杂网络流行病模型。方法:本文讨论了模型在不同网络结构下的图灵模式,并通过敏感性分析确定了模型的关键参数。还探讨了网络维度对随机网络上传染病传播的影响,并进一步讨论了随机网络的最小路径和最小覆盖集问题。我们还进行了参数识别实验,采用梯度下降算法实现了红细胞血浆的异质空间拟合模式,并通过马尔科夫链蒙特卡罗拟合实验模拟了 COVID-19 的传播路径,验证了模型的有效性;结果:找到了图灵不稳定性在同质和异质网络上的必要条件。在异质网格网络上,我们观察到了等密度种群的特殊模式。敏感性分析表明,感染率越高,感染人数越多。在随机网络上,维度越高,抑制传染病传播的效果越好。通过对比实验发现,梯度下降算法在参数识别实验中性能最佳。红细胞血浆拟合实验揭示了感染率的空间密度分布;结论:本研究为传染病的预防和控制提供了理论支持,复杂网络模型能更准确地模拟传染病的传播过程。敏感性分析和参数识别实验揭示了传播的关键影响因素和网络结构的作用。模型的有效性得到了实际数据的支持,有助于政府卫生部门制定科学的防控策略。
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来源期刊
Computer methods and programs in biomedicine
Computer methods and programs in biomedicine 工程技术-工程:生物医学
CiteScore
12.30
自引率
6.60%
发文量
601
审稿时长
135 days
期刊介绍: To encourage the development of formal computing methods, and their application in biomedical research and medical practice, by illustration of fundamental principles in biomedical informatics research; to stimulate basic research into application software design; to report the state of research of biomedical information processing projects; to report new computer methodologies applied in biomedical areas; the eventual distribution of demonstrable software to avoid duplication of effort; to provide a forum for discussion and improvement of existing software; to optimize contact between national organizations and regional user groups by promoting an international exchange of information on formal methods, standards and software in biomedicine. Computer Methods and Programs in Biomedicine covers computing methodology and software systems derived from computing science for implementation in all aspects of biomedical research and medical practice. It is designed to serve: biochemists; biologists; geneticists; immunologists; neuroscientists; pharmacologists; toxicologists; clinicians; epidemiologists; psychiatrists; psychologists; cardiologists; chemists; (radio)physicists; computer scientists; programmers and systems analysts; biomedical, clinical, electrical and other engineers; teachers of medical informatics and users of educational software.
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