A porohyperelastic scheme targeted at High-Performance Computing frameworks for the simulation of the intervertebral disc.

IF 4.9 2区 医学 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Computer methods and programs in biomedicine Pub Date : 2024-11-19 DOI:10.1016/j.cmpb.2024.108493
Dimitrios Lialios, Beatriz Eguzkitza, Guillaume Houzeaux, Eva Casoni, Laura Baumgartner, Jérôme Noailly, Estefano Muñoz-Moya, Benjamin Gantenbein, Mariano Vázquez
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Abstract

Background and objective: The finite element method is widely used for studying the intervertebral disc at the organ level due to its ability to model complex geometries. An indispensable requirement for proper modelling of the intervertebral disc is a reliable porohyperelastic framework that captures the elaborate underlying mechanics. The increased complexity of such models requires significant computational power that is available within high-performance computing systems. The objective of this study is to present such a framework, validated both against literature and experiments, aiming to enable intervertebral disc research to benefit from state-of-the-art computational resources.

Methods: In the context of this work, we implement a biphasic model that captures the mechanical response of the intricate, tissue-dependent models of the solid phase along with the hydrostatic pressure effects of the fluid phase. The tissue-dependent models involve the hyperelastic ground substance, fibrillar reinforcement, and osmotic swelling. The derived porohyperelastic, staggered scheme is implemented in Alya, a finite element code targeted at high-performance computing applications. The formulation is subsequently verified and validated by comparing the results of consolidation simulations with literature data for simulations and experiments using either generic or patient-specific geometries. Additionally, in-house experiments are replicated, evaluating the model's ability to simulate alternating loading. Finally, the implementation's circadian response is compared to previous implementation of similar material models in commercial software.

Results: Results align well with experimental and literature findings in terms of disc height reduction (4% error), intradiscal pressure (14% error) and disc bulging. Validating the patient-specific geometry results in 4% and 7% deviation in measuring height loss. Simulations show excellent agreement with in-house experimental results, with less than 1% error regarding height reduction. Finally, the comparison to similar, published, earlier implementation in commercial software unveils excellent agreement of less than 1% error for the water content during circadian simulations. Simulation times are reported at 4 min per circadian cycle in the supercomputer Marenostrum V.

Conclusions: This work presents a clear and validated formulation for simulating porohyperelastic materials based on assumptions that comply with the non-linear elasticity theory. The implementation in Alya enables intervertebral disc research to benefit from high-performance computing systems.

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针对椎间盘模拟的高性能计算框架的孔隙超弹性方案。
背景和目的:有限元法能够模拟复杂的几何形状,因此被广泛用于器官层面的椎间盘研究。要对椎间盘进行正确建模,一个不可或缺的条件就是要有一个可靠的孔隙超弹性框架来捕捉复杂的基本力学。此类模型复杂性的增加要求高性能计算系统具备强大的计算能力。本研究的目的是提出这样一个框架,并根据文献和实验进行验证,旨在使椎间盘研究从最先进的计算资源中获益:在这项工作中,我们实施了一个双相模型,该模型捕捉了固相复杂的组织依赖模型的机械响应以及流体相的静水压力效应。组织依赖模型涉及高弹性基底物质、纤维强化和渗透膨胀。推导出的孔隙超弹性交错方案在 Alya 中实施,Alya 是一种针对高性能计算应用的有限元代码。随后,通过将合并模拟结果与使用通用或特定患者几何形状进行模拟和实验的文献数据进行比较,对该方案进行了验证和确认。此外,还复制了内部实验,评估了模型模拟交替加载的能力。最后,将该实施方案的昼夜节律响应与之前商业软件中类似材料模型的实施方案进行了比较:结果:在椎间盘高度降低(误差为 4%)、椎间盘内压力(误差为 14%)和椎间盘膨出方面,结果与实验和文献研究结果十分吻合。对患者特定几何形状的验证结果显示,在测量高度损失时,误差分别为 4% 和 7%。模拟结果与内部实验结果非常吻合,在高度降低方面的误差小于 1%。最后,在昼夜节律模拟过程中,与类似的、已发表的、早期在商业软件中的实施结果进行比较后发现,两者在含水量方面的误差小于 1%,具有极好的一致性。在超级计算机 Marenostrum V 中,每个昼夜周期的模拟时间为 4 分钟:这项工作提出了一种清晰、有效的方法,用于模拟基于非线性弹性理论假设的孔隙弹性材料。在 Alya 中的实施使椎间盘研究能够受益于高性能计算系统。
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来源期刊
Computer methods and programs in biomedicine
Computer methods and programs in biomedicine 工程技术-工程:生物医学
CiteScore
12.30
自引率
6.60%
发文量
601
审稿时长
135 days
期刊介绍: To encourage the development of formal computing methods, and their application in biomedical research and medical practice, by illustration of fundamental principles in biomedical informatics research; to stimulate basic research into application software design; to report the state of research of biomedical information processing projects; to report new computer methodologies applied in biomedical areas; the eventual distribution of demonstrable software to avoid duplication of effort; to provide a forum for discussion and improvement of existing software; to optimize contact between national organizations and regional user groups by promoting an international exchange of information on formal methods, standards and software in biomedicine. Computer Methods and Programs in Biomedicine covers computing methodology and software systems derived from computing science for implementation in all aspects of biomedical research and medical practice. It is designed to serve: biochemists; biologists; geneticists; immunologists; neuroscientists; pharmacologists; toxicologists; clinicians; epidemiologists; psychiatrists; psychologists; cardiologists; chemists; (radio)physicists; computer scientists; programmers and systems analysts; biomedical, clinical, electrical and other engineers; teachers of medical informatics and users of educational software.
期刊最新文献
A porohyperelastic scheme targeted at High-Performance Computing frameworks for the simulation of the intervertebral disc. Dynamic evolution analysis and parameter optimization design of data-driven network infectious disease model. Recent advancements and future directions in automatic swallowing analysis via videofluoroscopy: A review. SlicerCineTrack: An open-source research toolkit for target tracking verification in 3D Slicer. Label correlated contrastive learning for medical report generation.
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