A Novel Sensitivity Maximization at a Given Specificity Method for Binary Classifications.

Seyyed Mahmood Ghasemi, Chunhui Gu, Johannes F Fahrmann, Samir Hanash, Kim-Anh Do, James P Long, Ehsan Irajizad
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Abstract

In the cancer early detection field, logistic regression (LR) is a frequently used approach to establish a combination rule that differentiates cancer from noncancer. However, the application of LR relies on a maximum likelihood approach, which may not yield optimal combination rules for maximizing sensitivity at a clinically desirable specificity and vice versa. In this article, we have developed an improved regression framework, sensitivity maximization at a given specificity (SMAGS), for binary classification that finds the linear decision rule, yielding the maximum sensitivity for a given specificity or the maximum specificity for a given sensitivity. We additionally expand the framework for feature selection that satisfies sensitivity and specificity maximizations. We compare our SMAGS method with normal LR using two synthetic datasets and reported data for colorectal cancer from the 2018 CancerSEEK study. In the colorectal cancer CancerSEEK dataset, we report 14% improvement in sensitivity at 98.5% specificity (0.31 vs. 0.57; P value <0.05). The SMAGS method provides an alternative to LR for modeling combination rules for biomarkers and early detection applications. Prevention Relevance: This study introduces a new machine learning methodology that identifies the optimal features and combination rules to maximize sensitivity at a fixed specificity, making it applicable to many existing biomarker prevention studies.

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一种新的给定特异性下灵敏度最大化的二元分类方法。
在癌症早期检测领域,逻辑回归是一种常用的方法来建立区分癌症和非癌症的组合规则。然而,逻辑回归的应用依赖于最大似然方法,这可能无法产生最佳组合规则,以最大限度地提高临床所需特异性的敏感性,反之亦然。在这里,我们开发了一个改进的回归框架,灵敏度最大化在给定的特异性,SMAGS,二元分类,找到线性决策规则产生的最大灵敏度为给定的特异性或最大特异性为给定的敏感性。我们还扩展了满足灵敏度和特异性最大化的特征选择框架。我们使用两个合成数据集和2018年CancerSEEK研究中结直肠癌(CRC)的报告数据,将SMAGS方法与正态逻辑回归进行比较。在CRC CancerSEEK数据集中,我们报告灵敏度提高14%,特异性为98.5% (0.31 vs 0.57;假定值:
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