The CALERIE Genomic Data Resource

IF 17 Q1 CELL BIOLOGY Nature aging Pub Date : 2024-12-13 DOI:10.1038/s43587-024-00775-0
C. P. Ryan, D. L. Corcoran, N. Banskota, C. Eckstein Indik, A. Floratos, R. Friedman, M. S. Kobor, V. B. Kraus, W. E. Kraus, J. L. MacIsaac, M. C. Orenduff, C. F. Pieper, J. P. White, L. Ferrucci, S. Horvath, K. M. Huffman, D. W. Belsky
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Abstract

Caloric restriction (CR) slows biological aging and prolongs healthy lifespan in model organisms. Findings from the CALERIE randomized, controlled trial of long-term CR in healthy, nonobese humans broadly supports a similar pattern of effects in humans. To expand our understanding of the molecular pathways and biological processes underpinning CR effects in humans, we generated a series of genomic datasets from stored biospecimens collected from n = 218 participants during the trial. These data constitute a genomic data resource for a randomized controlled trial of an intervention targeting the biology of aging. Datasets include whole-genome single-nucleotide polymorphism genotypes, and three-timepoint-longitudinal DNA methylation, mRNA and small RNA datasets generated from blood, skeletal muscle and adipose tissue samples (total sample n = 2,327). The CALERIE Genomic Data Resource described in this article is available from the Aging Research Biobank. This multi-tissue, multi-omics, longitudinal data resource has great potential to advance translational geroscience. ClinicalTrials.gov registration: NCT00427193 . Ryan and colleagues present multi-tissue, multi-omics, longitudinal datasets from the CALERIE phase 2 randomized controlled trial of caloric restriction in humans, providing a powerful resource for translational geroscience.

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CALERIE 基因组数据资源。
热量限制(CR)减缓生物老化,延长模式生物的健康寿命。CALERIE在健康非肥胖人群中进行的长期CR随机对照试验的结果广泛支持类似的人类效应模式。为了扩大我们对支持人类CR效应的分子途径和生物学过程的理解,我们从试验期间收集的n = 218名参与者的存储生物标本中生成了一系列基因组数据集。这些数据构成了针对衰老生物学干预的随机对照试验的基因组数据资源。数据集包括来自血液、骨骼肌和脂肪组织样本(总样本n = 2,327)的全基因组单核苷酸多态性基因型和三个时间点纵向DNA甲基化、mRNA和小RNA数据集。本文中描述的CALERIE基因组数据资源可从衰老研究生物银行获得。这种多组织、多组学、纵向的数据资源在推进转化老年科学方面具有巨大的潜力。ClinicalTrials.gov注册:NCT00427193。
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