From text to insight: large language models for chemical data extraction

IF 39 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Chemical Society Reviews Pub Date : 2024-12-20 DOI:10.1039/D4CS00913D
Mara Schilling-Wilhelmi, Martiño Ríos-García, Sherjeel Shabih, María Victoria Gil, Santiago Miret, Christoph T. Koch, José A. Márquez and Kevin Maik Jablonka
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Abstract

The vast majority of chemical knowledge exists in unstructured natural language, yet structured data is crucial for innovative and systematic materials design. Traditionally, the field has relied on manual curation and partial automation for data extraction for specific use cases. The advent of large language models (LLMs) represents a significant shift, potentially enabling non-experts to extract structured, actionable data from unstructured text efficiently. While applying LLMs to chemical and materials science data extraction presents unique challenges, domain knowledge offers opportunities to guide and validate LLM outputs. This tutorial review provides a comprehensive overview of LLM-based structured data extraction in chemistry, synthesizing current knowledge and outlining future directions. We address the lack of standardized guidelines and present frameworks for leveraging the synergy between LLMs and chemical expertise. This work serves as a foundational resource for researchers aiming to harness LLMs for data-driven chemical research. The insights presented here could significantly enhance how researchers across chemical disciplines access and utilize scientific information, potentially accelerating the development of novel compounds and materials for critical societal needs.

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从文本到洞察力:用于化学数据提取的大型语言模型
绝大多数化学知识都存在于非结构化的自然语言中,而结构化数据对于创新和系统化的材料设计至关重要。传统上,该领域一直依赖人工整理和部分自动化来提取特定用例的数据。大型语言模型(LLMs)的出现代表了一个重大转变,有可能让非专业人员高效地从非结构化文本中提取结构化、可操作的数据。虽然将 LLM 应用于化学和材料科学数据提取会带来独特的挑战,但领域知识为指导和验证 LLM 的输出提供了机会。本教程综述全面概述了化学领域基于 LLM 的结构化数据提取,总结了当前的知识,并概述了未来的发展方向。我们解决了缺乏标准化指南的问题,并提出了利用 LLM 与化学专业知识之间协同作用的框架。这项工作可作为研究人员的基础资源,帮助他们利用 LLM 进行数据驱动的化学研究。本文提出的见解可以极大地改进化学学科研究人员获取和利用科学信息的方式,从而有可能加快新型化合物和材料的开发,满足关键的社会需求。
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来源期刊
Chemical Society Reviews
Chemical Society Reviews 化学-化学综合
CiteScore
80.80
自引率
1.10%
发文量
345
审稿时长
6.0 months
期刊介绍: Chemical Society Reviews is published by: Royal Society of Chemistry. Focus: Review articles on topics of current interest in chemistry; Predecessors: Quarterly Reviews, Chemical Society (1947–1971); Current title: Since 1971; Impact factor: 60.615 (2021); Themed issues: Occasional themed issues on new and emerging areas of research in the chemical sciences
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