Known from trees and the tropics: new insights into the Fusarium lateritium species complex.

IF 14.1 1区 生物学 Q1 MYCOLOGY Studies in Mycology Pub Date : 2024-12-01 Epub Date: 2024-09-26 DOI:10.3114/sim.2024.109.06
M M Costa, M Sandoval-Denis, G M Moreira, H Kandemir, A Kermode, A G Buddie, M J Ryan, Y Becker, A Yurkov, W Maier, J Z Groenewald, L H Pfenning, P W Crous
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引用次数: 0

Abstract

The Fusarium lateritium species complex (FLSC) currently comprises 11 phylogenetic species, including accepted names such as F. lateritium, F. sarcochroum, and F. stilboides, which have mostly been reported in association with citrus and coffee. Many varieties were documented by Wollenweber & Reinking (1935), which is indicative of a wider diversity of species within this group. The lack of type material in some cases, especially for the older names, means that definition by molecular phylogeny is very difficult. In the present study, we examined 179 strains related to F. lateritium from different countries and substrates. Historic reference material, including representative strains from the Wollenweber & Reinking (1935) varieties were included in this study, DNA sequences were generated for comparison, and the morphology correlated with original descriptions to enable the correct application of older names. Strains were characterized by multi-gene phylogenetic analyses based on fragments of the β-tubulin (tub2), calmodulin (CaM), RNA polymerase II second largest subunit (rpb2), and translation elongation factor 1-alpha (tef1) genes, evaluation of morphological characters and host-substrate preferences. The biological species concept was tested by crossings in vitro. Strains previously identified as F. lateritium, F. stilboides, or one of their varieties based on morphology, were found to belong to 16 species in the FLSC, but also to species from six other species complexes (SC), including the F. citricola SC, F. heterosporum SC, F. incarnatum-equiseti SC, F. redolens SC, F. sambucinum SC, and the F. tricinctum SC. Eleven new phylogenetic and two biological species are described in the FLSC, and emended descriptions are provided for four previously described species. An epitype is designated for F. lateritium, and F. lateritium var. longum, a former variety within the FLSC, is lecto- and epitypified, and elevated to species level with a replacement name. Taxonomic novelties: New species: F. aurantii M.M. Costa, Sand.-Den. & Crous, F. chlamydocopiosum M.M. Costa, Sand.-Den. & Crous, F. citri-sinensis L. Zhao & J.X. Deng, F. coffeibaccae M.M. Costa, L.H. Pfenning, Sand.-Den. & Crous, F. crocatum M.M. Costa, Sand.-Den. & Crous, F. malawiense M.M. Costa, Sand.-Den. & Crous, F. microcyclum M.M. Costa, Sand.-Den. & Crous, F. oliniae M.M. Costa, Sand.-Den. & Crous; F. rufum M.M. Costa, Sand.-Den. & Crous, F. stramineum M.M. Costa, Sand.-Den. & Crous, F. velutinum M.M. Costa, Sand.-Den. & Crous, F. verruculosum M.M. Costa, Sand.-Den. & Crous; Replacement name: F. hanswilhelmii M.M. Costa, Sand.-Den. & Crous; Epitype (basionym): F. lateritium Nees, F. lateritium var. longum Wollenw.; Lectotype (basionym): F. lateritium var. longum Wollenw. Citation: Costa MM, Sandoval-Denis M, Moreira GM, Kandemir H, Kermode A, Buddie AG, Ryan MJ, Becker Y, Yurkov A, Maier W, Groenewald JZ, Pfenning LH, Crous PW (2024). Known from trees and the tropics: new insights into the Fusarium lateritium species complex. Studies in Mycology 109: 403-450. doi: 10.3114/sim.2024.109.06.

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从树木和热带地区得知:红土镰刀菌物种复合体的新见解。
红木镰刀菌物种复合体(FLSC)目前包括11种系统发育物种,包括红木镰刀菌、肉镰刀菌和stilboides等公认的名称,它们大多与柑橘和咖啡有关。Wollenweber和Reinking(1935)记录了许多品种,这表明在这个群体中物种的多样性更大。在某些情况下缺乏类型材料,特别是对于较旧的名称,意味着通过分子系统发育来定义是非常困难的。在本研究中,我们检测了来自不同国家和不同基质的179株与红土赤霉病有关的菌株。本研究纳入了历史参考资料,包括Wollenweber & Reinking(1935)品种的代表性菌株,生成DNA序列进行比较,并将形态学与原始描述相关联,以便正确使用较早的名称。利用β-微管蛋白(tub2)、钙调蛋白(CaM)、RNA聚合酶II第二大亚基(rpb2)和翻译延伸因子1- α (tef1)基因片段进行多基因系统发育分析,分析菌株的形态特征和宿主-底物偏好。通过体外杂交验证了生物物种概念。经形态学鉴定为红土赤霉病菌、stilboides赤霉病菌或其变种之一的菌株,在FLSC中被发现属于16个种,但也属于其他6个种复合物(SC)的种,包括F. citricola SC、F. heterosporum SC、F. incarnatum-equiseti SC、F. redolens SC、F. sambucinum SC和F. tricinctum SC。在FLSC中描述了11个新的系统发育种和2个生物种。并对先前描述的四种提供了修订的描述。红土F. lateritium var. longum被指定为一个表型,红土F. lateritium var. longum是FLSC内的一个前品种,被lecto和表型化,并以一个替代名称提升到物种水平。分类新异:新种:F. aurantii M.M. Costa, sand - den。& croous, F. chlamydocopiosum, M.M. Costa, sand - den。赵丽丽,邓俊贤,科斯塔,彭宁,沙登。M.M.科斯塔,桑德-登。M.M.科斯塔,桑德-登。M.M. Costa, sand - den。&克劳斯,F. oliniae, M.M. Costa, sand - den。& Crous;F. rufum . M.M.科斯塔,沙登。& cros, F. stramineum, M.M. Costa, sand - den。M.M.科斯塔,桑德-登。M.M. Costa, sand - den。& Crous;替代名称:F. hanswilhelmii M.M. Costa, sand - den。& Crous;典型型(基底型):红土F. lateritium Nees,红土F. lateritium var. longum Wollenw;卵细胞型(基底):红土F. lateritium var. longum Wollenw。引用本文:Costa MM, Sandoval-Denis M, Moreira GM, Kandemir H, Kermode A, Buddie AG, Ryan MJ, Becker Y, Yurkov A, Maier W, Groenewald JZ, Pfenning LH, Crous PW(2024)。从树木和热带地区得知:红土镰刀菌物种复合体的新见解。真菌学研究109:403-450。doi: 10.3114 / sim.2024.109.06。
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来源期刊
Studies in Mycology
Studies in Mycology 生物-真菌学
CiteScore
35.60
自引率
3.00%
发文量
7
期刊介绍: The international journal Studies in Mycology focuses on advancing the understanding of filamentous fungi, yeasts, and various aspects of mycology. It publishes comprehensive systematic monographs as well as topical issues covering a wide range of subjects including biotechnology, ecology, molecular biology, pathology, and systematics. This Open-Access journal offers unrestricted access to its content. Each issue of Studies in Mycology consists of around 5 to 6 papers, either in the form of monographs or special focused topics. Unlike traditional length restrictions, the journal encourages submissions of manuscripts with a minimum of 50 A4 pages in print. This ensures a thorough exploration and presentation of the research findings, maximizing the depth of the published work.
期刊最新文献
Cytospora: an important genus of canker pathogens. Diaporthe species on palms - integrative taxonomic approach for species boundaries delimitation in the genus Diaporthe, with the description of D. pygmaeae sp. nov. Sporocadaceae revisited. Known from trees and the tropics: new insights into the Fusarium lateritium species complex. New Mucorales from opposite ends of the world.
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