Gallic Acid: A Potent Metabolite Targeting Shikimate Kinase in Acinetobacter baumannii.

IF 3.4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Metabolites Pub Date : 2024-12-23 DOI:10.3390/metabo14120727
Mansour S Alturki, Abdulaziz H Al Khzem, Mohamed S Gomaa, Nada Tawfeeq, Marwah H Alhamadah, Futun M Alshehri, Raghad Alzahrani, Hanin Alghamdi, Thankhoe A Rants'o, Khaled A G Ayil, Abdulaziz K Al Mouslem, Mohammed Almaghrabi
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Abstract

Background/Objectives:Acinetobacter baumannii is a highly multidrug-resistant pathogen resistant to almost all classes of antibiotics; new therapeutic strategies against this infectious agent are urgently needed. Shikimate kinase is an enzyme belonging to the shikimate pathway and has become a potential target for drug development. This work describes the search for Food and Drug Administration (FDA)-approved drugs and natural compounds, including gallic acid, that could be repurposed as selective shikimate kinase inhibitors by integrated computational and experimental approaches. Methods: Approaches to drug design using structure-based and ligand-based methodology, in-silico screening, molecular docking, and molecular dynamics for the study of both binding affinity and stability. Experimental Validation Determination of minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) on Acinetobacter baumannii and Enterococcus faecalis. Results/Conclusions: Among them, gallic acid, obtained from plants, proved to be the most promising compound that showed sufficient binding with shikimate kinase through computational studies. Gallic acid showed very good activity against Acinetobacter baumannii and Enterococcus faecalis in the MIC and MBC assay, respectively. Gallic acid exhibited better activity against Acinetobacter baumannii due to the overexpression of shikimate kinase. Gallic acid has emerged as a potential therapeutic candidate drug against A. baumannii infection and, therefore, as a strategy against the appearance of multidrug-resistant microorganisms. This study not only identifies a novel repurposing opportunity for gallic acid but also provides a comprehensive computational and experimental framework for accelerating antimicrobial drug discovery against multidrug-resistant pathogens.

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没食子酸:鲍曼不动杆菌中针对莽草酸激酶的有效代谢物。
背景/目的:鲍曼不动杆菌是一种高度耐多药病原菌,对几乎所有种类的抗生素都具有耐药性;迫切需要新的治疗策略来对抗这种传染性病原体。莽草酸激酶是一种属于莽草酸途径的酶,已成为药物开发的潜在靶点。这项工作描述了寻找食品和药物管理局(FDA)批准的药物和天然化合物,包括没食子酸,可以通过综合计算和实验方法重新用作选择性莽草酸激酶抑制剂。方法:采用基于结构和基于配体的方法进行药物设计,通过硅筛选、分子对接和分子动力学来研究药物的结合亲和力和稳定性。测定鲍曼不动杆菌和粪肠球菌的最小抑菌浓度(MIC)和最小杀菌浓度(MBC)。结果/结论:其中,从植物中提取的没食子酸通过计算研究证明是最有前途的化合物,它与莽草酸激酶有充分的结合。在MIC和MBC试验中,没食子酸分别对鲍曼不动杆菌和粪肠球菌有很好的抑制作用。没食子酸表现出较好的抗鲍曼不动杆菌活性是由于过表达莽草酸激酶。没食子酸已成为一种潜在的治疗鲍曼不动杆菌感染的候选药物,因此,作为一种对抗多重耐药微生物出现的策略。这项研究不仅确定了没食子酸的一个新的再利用机会,而且为加速发现针对多重耐药病原体的抗菌药物提供了一个全面的计算和实验框架。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Metabolites
Metabolites Biochemistry, Genetics and Molecular Biology-Molecular Biology
CiteScore
5.70
自引率
7.30%
发文量
1070
审稿时长
17.17 days
期刊介绍: Metabolites (ISSN 2218-1989) is an international, peer-reviewed open access journal of metabolism and metabolomics. Metabolites publishes original research articles and review articles in all molecular aspects of metabolism relevant to the fields of metabolomics, metabolic biochemistry, computational and systems biology, biotechnology and medicine, with a particular focus on the biological roles of metabolites and small molecule biomarkers. Metabolites encourages scientists to publish their experimental and theoretical results in as much detail as possible. Therefore, there is no restriction on article length. Sufficient experimental details must be provided to enable the results to be accurately reproduced. Electronic material representing additional figures, materials and methods explanation, or supporting results and evidence can be submitted with the main manuscript as supplementary material.
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