D3-ImgNet: A Framework for Molecular Properties Prediction Based on Data-Driven Electron Density Images.

IF 2.8 2区 化学 Q3 CHEMISTRY, PHYSICAL The Journal of Physical Chemistry A Pub Date : 2025-01-16 Epub Date: 2025-01-03 DOI:10.1021/acs.jpca.4c05519
Junfeng Zhao, Lixin Tang, Jiyin Liu, Jian Wu, Xiangman Song
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Abstract

Artificial intelligence technology has introduced a new research paradigm into the fields of quantum chemistry and materials science, leading to numerous studies that utilize machine learning methods to predict molecular properties. We contend that an exemplary deep learning model should not only achieve high-precision predictions of molecular properties but also incorporate guidance from physical mechanisms. Here, we propose a framework for predicting molecular properties based on data-driven electron density images, referred to as D3-ImgNet. This framework integrates group theory, density functional theory-related mechanisms, deep learning techniques, and multiobjective optimization mechanisms, embodying a methodological fusion of data analytics and system optimization. Initially, we focus on atomization energies as the primary target of our study, using the QM9 data set to demonstrate the framework's ability to predict molecular atomization energies with high accuracy and excellent exploration performance. We then further evaluate its predictive capabilities for dipole moments and forces with the QM9X data set, achieving satisfactory results. Additionally, we tested the D3-ImgNet framework on the SN2 reaction data set to demonstrate its ability to precisely predict the minimum energy paths of SN2 chemical reactions, showcasing its portability and adaptability in chemical reaction modeling. Finally, visualizations of the electronic density generated by the framework faithfully replicate the physical phenomenon of electron density transfer. We believe that this framework has the potential to accelerate property predictions and high-throughput screening of functional materials.

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3d - imgnet:基于数据驱动电子密度图像的分子性质预测框架。
人工智能技术为量子化学和材料科学领域引入了一种新的研究范式,导致许多研究利用机器学习方法来预测分子性质。我们认为,一个典型的深度学习模型不仅应该实现分子性质的高精度预测,而且还应该纳入物理机制的指导。在这里,我们提出了一个基于数据驱动的电子密度图像预测分子性质的框架,称为D3-ImgNet。该框架集成了群论、密度泛函理论相关机制、深度学习技术和多目标优化机制,体现了数据分析和系统优化的方法论融合。首先,我们将原子化能作为研究的主要目标,利用QM9数据集证明了该框架预测分子原子化能的能力,具有较高的精度和优异的勘探性能。然后,我们利用QM9X数据集进一步评估了它对偶极矩和力的预测能力,取得了令人满意的结果。此外,我们在SN2反应数据集上对D3-ImgNet框架进行了测试,验证了其能够准确预测SN2化学反应的最小能量路径,展示了其在化学反应建模中的可移植性和适应性。最后,由框架生成的电子密度的可视化图像忠实地复制了电子密度转移的物理现象。我们相信该框架具有加速性能预测和高通量筛选功能材料的潜力。
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来源期刊
The Journal of Physical Chemistry A
The Journal of Physical Chemistry A 化学-物理:原子、分子和化学物理
CiteScore
5.20
自引率
10.30%
发文量
922
审稿时长
1.3 months
期刊介绍: The Journal of Physical Chemistry A is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, and chemical physicists.
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